Articles with public access mandates - Sarah Cohen-BoulakiaLearn more
Available somewhere: 15
NGPhylogeny. fr: new generation phylogenetic services for non-specialists
F Lemoine, D Correia, V Lefort, O Doppelt-Azeroual, F Mareuil, ...
Nucleic acids research 47 (W1), W260-W265, 2019
Mandates: Agence Nationale de la Recherche
FAIR computational workflows
C Goble, S Cohen-Boulakia, S Soiland-Reyes, D Garijo, Y Gil, MR Crusoe, ...
Data Intelligence 2 (1-2), 108-121, 2020
Mandates: US National Science Foundation, US Department of Defense, US National …
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks
A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 680, 2018
Mandates: US National Institutes of Health, Fundação para a Ciência e a Tecnologia …
Search, adapt, and reuse: the future of scientific workflows
S Cohen-Boulakia, U Leser
ACM SIGMOD Record 40 (2), 6-16, 2011
Mandates: German Research Foundation
Similarity search for scientific workflows
J Starlinger, B Brancotte, S Cohen-Boulakia, U Leser
Proceedings of the VLDB Endowment (PVLDB) 7 (12), 1143-1154, 2014
Mandates: German Research Foundation
Distilling structure in Taverna scientific workflows: a refactoring approach
S Cohen-Boulakia, J Chen, P Missier, C Goble, AR Williams, ...
BMC bioinformatics 15, 1-14, 2014
Mandates: UK Engineering and Physical Sciences Research Council, UK Research & Innovation
Effective and efficient similarity search in scientific workflow repositories
J Starlinger, S Cohen-Boulakia, S Khanna, SB Davidson, U Leser
Future Generation Computer Systems 56, 584-594, 2016
Mandates: German Research Foundation
Research response to coronavirus disease 2019 needed better coordination and collaboration: a living mapping of registered trials
P Riviere, P Ripoll, J Barnier, R Vuillemot, G Ferrand, S Cohen-Boulakia, ...
Journal of Clinical Epidemiology 130, 107-116, 2021
Mandates: Health Research Board, Ireland, Agence Nationale de la Recherche
Layer decomposition: An effective structure-based approach for scientific workflow similarity
J Starlinger, S Cohen-Boulakia, S Khanna, SB Davidson, U Leser
2014 IEEE 10th International Conference on e-Science 1, 169-176, 2014
Mandates: German Research Foundation
Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping
S Artzet, TW Chen, J Chopard, N Brichet, M Mielewczik, ...
BioRxiv, 805739, 2019
Mandates: Agence Nationale de la Recherche
Distributed management of scientific workflows for high-throughput plant phenotyping
C Pradal, S Cohen-Boulakia, G Heidsieck, E Pacitti, F Tardieu, ...
Mandates: European Commission
Reprohackathons: promoting reproducibility in bioinformatics through training
T Cokelaer, S Cohen-Boulakia, F Lemoine
Bioinformatics 39 (Supplement_1), i11-i20, 2023
Mandates: Agence Nationale de la Recherche
Representing bioinformatics Nextflow workflows in RO-Crate: challenges and opportunities
G Marchment, M Schmit, C Sebe, F Lemoine, H Ménager, ...
Semantic Web Applications and Tools for Health Care and Life Sciences, 2024
Mandates: Agence Nationale de la Recherche
Extraction d’entités nommées décrivant des chaînes de traitement bioinformatiques dans des articles scientifiques en anglais
C Sebe, S Cohen-Boulakia, O Ferret, A Névéol
Actes de JEP-TALN-RECITAL 2024. 31ème Conférence sur le Traitement …, 2024
Mandates: Agence Nationale de la Recherche
BioFlow-Insight: facilitating reuse of Nextflow workflows with structure reconstruction and visualization
G Marchment, B Brancotte, M Schmit, F Lemoine, S Cohen-Boulakia
NAR Genomics and Bioinformatics 6 (3), 2024
Mandates: Agence Nationale de la Recherche
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