Articles with public access mandates - Filip GinterLearn more
Available somewhere: 49
CoNLL 2018 shared task: Multilingual parsing from raw text to universal dependencies
D Zeman, J Hajic, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ...
Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018
Mandates: Swedish Research Council, European Commission
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Mandates: US National Science Foundation, Swiss National Science Foundation, US …
Building the essential resources for Finnish: the Turku Dependency Treebank
K Haverinen, J Nyblom, T Viljanen, V Laippala, S Kohonen, A Missilä, ...
Language Resources and Evaluation 48, 493-531, 2014
Mandates: Academy of Finland
Turku neural parser pipeline: An end-to-end system for the CoNLL 2018 shared task
J Kanerva, F Ginter, N Miekka, A Leino, T Salakoski
Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018
Mandates: Academy of Finland
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
Mandates: US National Institutes of Health, Research Foundation (Flanders), UK …
Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task
A Sarker, M Belousov, J Friedrichs, K Hakala, S Kiritchenko, F Mehryary, ...
Journal of the American Medical Informatics Association 25 (10), 1274-1283, 2018
Mandates: US National Institutes of Health, UK Engineering and Physical Sciences …
Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks
J Kanerva, F Ginter, T Salakoski
Natural Language Engineering 27 (5), 545-574, 2021
Mandates: Academy of Finland
EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction
K Hakala, S Van Landeghem, T Salakoski, Y Van de Peer, F Ginter
Proceedings of the BioNLP shared task 2013 workshop, 26-34, 2013
Mandates: Research Foundation (Flanders)
EVEX: a PubMed-scale resource for homology-based generalization of text mining predictions
S Van Landeghem, F Ginter, Y Van de Peer, T Salakoski
Proceedings of BioNLP 2011 workshop, 28-37, 2011
Mandates: Research Foundation (Flanders)
Exploring biomolecular literature with EVEX: connecting genes through events, homology, and indirect associations
S Van Landeghem, K Hakala, S Rönnqvist, T Salakoski, Y Van de Peer, ...
Advances in bioinformatics 2012 (1), 582765, 2012
Mandates: Research Foundation (Flanders)
Deep learning with minimal training data: TurkuNLP entry in the BioNLP shared task 2016
F Mehryary, J Björne, S Pyysalo, T Salakoski, F Ginter
Proceedings of the 4th BioNLP shared task workshop, 73-81, 2016
Mandates: UK Medical Research Council
Applying BLAST to text reuse detection in finnish newspapers and journals, 1771-1910
A Vesanto, A Nivala, H Rantala, T Salakoski, H Salmi, F Ginter
Proceedings of the NoDaLiDa 2017 Workshop on Processing Historical Language …, 2017
Mandates: Academy of Finland
The reuse of texts in Finnish newspapers and journals, 1771–1920: A digital humanities perspective
H Salmi, P Paju, H Rantala, A Nivala, A Vesanto, F Ginter
Historical Methods: A Journal of Quantitative and Interdisciplinary History …, 2020
Mandates: Academy of Finland
Care episode retrieval: distributional semantic models for information retrieval in the clinical domain
H Moen, F Ginter, E Marsi, LM Peltonen, T Salakoski, S Salanterä
BMC medical informatics and decision making 15, 1-19, 2015
Mandates: Academy of Finland, Research Council of Norway
Cell line name recognition in support of the identification of synthetic lethality in cancer from text
S Kaewphan, S Van Landeghem, T Ohta, Y Van de Peer, F Ginter, ...
Bioinformatics 32 (2), 276-282, 2016
Mandates: Research Foundation (Flanders), Academy of Finland
The finnish proposition bank
K Haverinen, J Kanerva, S Kohonen, A Missilä, S Ojala, T Viljanen, ...
Language Resources and Evaluation 49, 907-926, 2015
Mandates: Academy of Finland
Assessing the annotation consistency of the universal dependencies corpora
MC de Marneffe, M Grioni, J Kanerva, F Ginter
Proceedings of the Fourth International Conference on Dependency Linguistics …, 2017
Mandates: Academy of Finland
U-Compare bio-event meta-service: compatible BioNLP event extraction services
Y Kano, J Björne, F Ginter, T Salakoski, E Buyko, U Hahn, KB Cohen, ...
BMC bioinformatics 12, 1-9, 2011
Mandates: US National Institutes of Health, Research Foundation (Flanders), Government …
A system for identifying and exploring text repetition in large historical document corpora
A Vesanto, F Ginter, H Salmi, A Nivala, T Salakoski
Proceedings of the 21st Nordic Conference on Computational Linguistics, 330-333, 2017
Mandates: Academy of Finland
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