Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer S Raghavan, PS Winter, AW Navia, HL Williams, A DenAdel, KE Lowder, ... Cell 184 (25), 6119-6137. e26, 2021 | 302 | 2021 |
Multiple optimal reconciliations under the duplication-loss-coalescence model H Du, YS Ong, M Knittel, R Mawhorter, N Liu, G Gross, R Tojo, ... IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2019 | 9 | 2019 |
Inferring pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model R Mawhorter, N Liu, R Libeskind-Hadas, YC Wu BMC bioinformatics 20, 1-13, 2019 | 6 | 2019 |
Compressed phenotypic screens for complex multicellular models and high-content assays BE Mead, C Kummerlowe, N Liu, WE Kattan, T Cheng, JH Cheah, ... bioRxiv, 2023 | 3 | 2023 |
Maximum parsimony reconciliation in the DTLOR model J Liu, R Mawhorter, N Liu, S Santichaivekin, E Bush, R Libeskind-Hadas BMC bioinformatics 22, 1-22, 2021 | 3 | 2021 |
An integer linear programming solution for the most parsimonious reconciliation problem under the duplication-loss-coalescence model M Carothers, J Gardi, G Gross, T Kuze, N Liu, F Plunkett, J Qian, YC Wu Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 2 | 2020 |
xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes N Liu, TA Gonzalez, J Fischer, C Hong, M Johnson, R Mawhorter, ... BMC bioinformatics 24 (1), 295, 2023 | 1 | 2023 |