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James Boyko
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Generalized hidden Markov models for phylogenetic comparative datasets
JD Boyko, JM Beaulieu
Methods in Ecology and Evolution 12 (3), 468-478, 2021
912021
Linking mode of seed dispersal and climatic niche evolution in flowering plants
T Vasconcelos, JD Boyko, JM Beaulieu
Journal of Biogeography 50 (1), 43-56, 2023
262023
corHMM: Hidden Markov models of character evolution
J Beaulieu, B O’Meara, J Oliver, J Boyko
R package version 2 (1), 2021
242021
Reducing the biases in false correlations between discrete characters
JD Boyko, JM Beaulieu
Systematic Biology 72 (2), 476-488, 2023
20*2023
An interdisciplinary outlook on large language models for scientific research
J Boyko, J Cohen, N Fox, MH Veiga, JI Li, J Liu, B Modenesi, AH Rauch, ...
arXiv preprint arXiv:2311.04929, 2023
162023
Models with unequal transition rates favor marine origins of Cyanobacteria and photosynthetic eukaryotes
T Nakov, JD Boyko, AJ Alverson, JM Beaulieu
Proceedings of the National Academy of Sciences 114 (50), E10606-E10607, 2017
152017
The evolutionary responses of life‐history strategies to climatic variability in flowering plants
JD Boyko, ER Hagen, JM Beaulieu, T Vasconcelos
New Phytologist 240 (4), 1587-1600, 2023
102023
A novel method for jointly modeling the evolution of discrete and continuous traits
JD Boyko, BC O’Meara, JM Beaulieu
Evolution 77 (3), 836-851, 2023
102023
Package ‘hisse’
J Beaulieu, B O'Meara, D Caetano, J Boyko, T Vasconcelos
CRAN, 2023
62023
Synthesizing existing phylogenetic data to advance phylogenetic research in Orobanchaceae
SME Mortimer, J Boyko, JM Beaulieu, DC Tank
Systematic Botany 47 (2), 533-544, 2022
62022
dentist: Quantifying uncertainty by sampling points around maximum likelihood estimates
JD Boyko, BC O'Meara
Methods in Ecology and Evolution 15 (4), 628-638, 2024
4*2024
State of the world’s plants and fungi 2023. Royal Botanic Gardens, Kew
A Antonelli, C Fry, RJ Smith, J Eden, RHA Govaerts, P Kersey, ...
32023
Investigating historical drivers of latitudinal gradients in polyploid plant biogeography: A multiclade perspective
ER Hagen, T Vasconcelos, JD Boyko, JM Beaulieu
American Journal of Botany, e16356, 2024
12024
Rates of biome shift predict diversification dynamics in flowering plants
JD Boyko, T Vasconcelos
bioRxiv, 2024.06. 03.597046, 2024
2024
mvh: an R tool to assemble and organize virtual herbaria from openly available specimen images
T Vasconcelos, J Boyko
bioRxiv, 2024.08. 25.609600, 2024
2024
SegColR: Deep Learning for Automated Segmentation and Color Extraction
J Boyko
bioRxiv, 2024.07. 28.605475, 2024
2024
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Articles 1–16