Articles with public access mandates - Ryan LayerLearn more
Available somewhere: 34
LUMPY: a probabilistic framework for structural variant discovery
RM Layer, C Chiang, AR Quinlan, IM Hall
Genome biology 15, 1-19, 2014
Mandates: US National Institutes of Health
SpeedSeq: ultra-fast personal genome analysis and interpretation
C Chiang, RM Layer, GG Faust, MR Lindberg, DB Rose, EP Garrison, ...
Nature methods 12 (10), 966-968, 2015
Mandates: US National Institutes of Health
Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues
Y Shibata, P Kumar, R Layer, S Willcox, JR Gagan, JD Griffith, A Dutta
Science 336 (6077), 82-86, 2012
Mandates: US National Institutes of Health
An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder
DM Werling, H Brand, JY An, MR Stone, L Zhu, JT Glessner, RL Collins, ...
Nature genetics 50 (5), 727-736, 2018
Mandates: US National Institutes of Health, Autism Science Foundation, USA
A map of constrained coding regions in the human genome
JM Havrilla, BS Pedersen, RM Layer, AR Quinlan
Nature genetics 51 (1), 88-95, 2019
Mandates: US National Institutes of Health
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
Mandates: US National Science Foundation, US National Institutes of Health
Mapping and characterization of structural variation in 17,795 human genomes
HJ Abel, DE Larson, AA Regier, C Chiang, I Das, KL Kanchi, RM Layer, ...
Nature 583 (7814), 83-89, 2020
Mandates: US National Institutes of Health, Academy of Finland, State of Califonia
MicroRNA-378 targets the myogenic repressor MyoR during myoblast differentiation
J Gagan, BK Dey, R Layer, Z Yan, A Dutta
Journal of Biological Chemistry 286 (22), 19431-19438, 2011
Mandates: US National Institutes of Health, Heart and Stroke Foundation of Canada
Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms
A Malhotra, M Lindberg, GG Faust, ML Leibowitz, RA Clark, RM Layer, ...
Genome research 23 (5), 762-776, 2013
Mandates: US National Institutes of Health, Wellcome Trust
Vcfanno: fast, flexible annotation of genetic variants
BS Pedersen, RM Layer, AR Quinlan
Genome biology 17, 1-9, 2016
Mandates: US National Institutes of Health
Combating subclonal evolution of resistant cancer phenotypes
SW Brady, JA McQuerry, Y Qiao, SR Piccolo, G Shrestha, DF Jenkins, ...
Nature communications 8 (1), 1231, 2017
Mandates: US National Institutes of Health
GIGGLE: a search engine for large-scale integrated genome analysis
RM Layer, BS Pedersen, T DiSera, GT Marth, J Gertz, AR Quinlan
Nature methods 15 (2), 123-126, 2018
Mandates: US National Institutes of Health
MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis
AC Mueller, MA Cichewicz, BK Dey, R Layer, BJ Reon, JR Gagan, A Dutta
Molecular and cellular biology, 2015
Mandates: US National Institutes of Health
Regulation of several androgen-induced genes through the repression of the miR-99a/let-7c/miR-125b-2 miRNA cluster in prostate cancer cells
D Sun, R Layer, AC Mueller, MA Cichewicz, M Negishi, BM Paschal, ...
Oncogene 33 (11), 1448-1457, 2014
Mandates: US National Institutes of Health
Notch3 and Mef2c proteins are mutually antagonistic via Mkp1 protein and miR-1/206 microRNAs in differentiating myoblasts
J Gagan, BK Dey, R Layer, Z Yan, A Dutta
Journal of Biological Chemistry 287 (48), 40360-40370, 2012
Mandates: US National Institutes of Health, Heart and Stroke Foundation of Canada
The structural variation landscape in 492 Atlantic salmon genomes
AC Bertolotti, RM Layer, MK Gundappa, MD Gallagher, E Pehlivanoglu, ...
Nature Communications 11 (1), 5176, 2020
Mandates: UK Biotechnology and Biological Sciences Research Council, Research Council …
Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy
BEP Ostrander, RJ Butterfield, BS Pedersen, AJ Farrell, RM Layer, ...
NPJ genomic medicine 3 (1), 22, 2018
Mandates: US National Institutes of Health
Samplot: a platform for structural variant visual validation and automated filtering
JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ...
Genome biology 22 (1), 161, 2021
Mandates: US National Institutes of Health
Efficient genotype compression and analysis of large genetic-variation data sets
RM Layer, N Kindlon, KJ Karczewski, Exome Aggregation Consortium, ...
Nature methods 13 (1), 63-65, 2016
Mandates: US National Institutes of Health
svtools: population-scale analysis of structural variation
DE Larson, HJ Abel, C Chiang, A Badve, I Das, JM Eldred, RM Layer, ...
Bioinformatics 35 (22), 4782-4787, 2019
Mandates: US National Institutes of Health
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