Gut-microbiota-targeted diets modulate human immune status HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ... Cell 184 (16), 4137-4153. e14, 2021 | 753 | 2021 |
Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states D Furman, J Chang, L Lartigue, CR Bolen, F Haddad, B Gaudilliere, ... Nature medicine 23 (2), 174-184, 2017 | 383 | 2017 |
Clinical recovery from surgery correlates with single-cell immune signatures B Gaudillière, GK Fragiadakis, RV Bruggner, M Nicolau, R Finck, M Tingle, ... Science translational medicine 6 (255), 255ra131-255ra131, 2014 | 322 | 2014 |
An interactive reference framework for modeling a dynamic immune system MH Spitzer, PF Gherardini, GK Fragiadakis, N Bhattacharya, RT Yuan, ... Science 349 (6244), 1259425, 2015 | 267 | 2015 |
Global absence and targeting of protective immune states in severe COVID-19 AJ Combes, T Courau, NF Kuhn, KH Hu, A Ray, WS Chen, NW Chew, ... Nature 591 (7848), 124-130, 2021 | 250 | 2021 |
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ... Science translational medicine 13 (612), eabh2624, 2021 | 187 | 2021 |
Gut microbiome transition across a lifestyle gradient in Himalaya AR Jha, ER Davenport, Y Gautam, D Bhandari, S Tandukar, KM Ng, ... PLoS biology 16 (11), e2005396, 2018 | 174 | 2018 |
Links between environment, diet, and the hunter-gatherer microbiome GK Fragiadakis, SA Smits, ED Sonnenburg, W Van Treuren, G Reid, ... Gut Microbes 10 (2), 216-227, 2019 | 145 | 2019 |
Pursuing human-relevant gut microbiota-immune interactions SP Spencer, GK Fragiadakis, JL Sonnenburg Immunity 51 (2), 225-239, 2019 | 132 | 2019 |
Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining GK Behbehani, C Thom, ER Zunder, R Finck, B Gaudilliere, ... Cytometry Part A 85 (12), 1011-1019, 2014 | 126 | 2014 |
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit DG Bunis, J Andrews, GK Fragiadakis, TD Burt, M Sirota Bioinformatics 36 (22-23), 5535-5536, 2020 | 124 | 2020 |
A comprehensive atlas of immunological differences between humans, mice, and non-human primates ZB Bjornson-Hooper, GK Fragiadakis, MH Spitzer, H Chen, D Madhireddy, ... Frontiers in immunology 13, 867015, 2022 | 108 | 2022 |
Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight GK Fragiadakis, HC Wastyk, JL Robinson, ED Sonnenburg, ... The American journal of clinical nutrition 111 (6), 1127-1136, 2020 | 107 | 2020 |
Patient-specific immune states before surgery are strong correlates of surgical recovery GK Fragiadakis, B Gaudillière, EA Ganio, N Aghaeepour, M Tingle, ... Anesthesiology 123 (6), 1241-1255, 2015 | 93 | 2015 |
Multicenter systems analysis of human blood reveals immature neutrophils in males and during pregnancy J Blazkova, S Gupta, Y Liu, B Gaudilliere, EA Ganio, CR Bolen, ... The Journal of Immunology 198 (6), 2479-2488, 2017 | 90 | 2017 |
Discovering dominant tumor immune archetypes in a pan-cancer census AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ... Cell 185 (1), 184-203. e19, 2022 | 89 | 2022 |
Sex differences in the blood transcriptome identify robust changes in immune cell proportions with aging and influenza infection E Bongen, H Lucian, A Khatri, GK Fragiadakis, ZB Bjornson, GP Nolan, ... Cell Reports 29 (7), 1961-1973. e4, 2019 | 86 | 2019 |
Increased risk of severe clinical course of COVID-19 in carriers of HLA-C* 04: 01 J Weiner, P Suwalski, M Holtgrewe, A Rakitko, C Thibeault, M Mueller, ... EClinicalMedicine 40, 2021 | 76 | 2021 |
Implementing mass cytometry at the bedside to study the immunological basis of human diseases: distinctive immune features in patients with a history of term or preterm birth B Gaudillière, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ... Cytometry Part A 87 (9), 817-829, 2015 | 55 | 2015 |
The effect of microbial colonization on the host proteome varies by gastrointestinal location JS Lichtman, E Alsentzer, M Jaffe, D Sprockett, E Masutani, E Ikwa, ... The ISME journal 10 (5), 1170-1181, 2016 | 42 | 2016 |