| OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016 | 641 | 2016 |
| Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19 G Nouailles, E Wyler, P Pennitz, D Postmus, D Vladimirova, J Kazmierski, ... Nature communications 12 (1), 4869, 2021 | 69 | 2021 |
| MSSimulator: Simulation of mass spectrometry data C Bielow, S Aiche, S Andreotti, K Reinert Journal of proteome research 10 (7), 2922-2929, 2011 | 58 | 2011 |
| CIDANE: comprehensive isoform discovery and abundance estimation S Canzar, S Andreotti, D Weese, K Reinert, GW Klau Genome biology 17, 1-18, 2016 | 54 | 2016 |
| Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics E Wyler, JM Adler, K Eschke, GT Alves, S Peidli, F Pott, J Kazmierski, ... Molecular Therapy 30 (5), 1952-1965, 2022 | 28 | 2022 |
| Antilope—A Lagrangian Relaxation approach to the de novo peptide sequencing problem S Andreotti, GW Klau, K Reinert IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (2), 385-394, 2011 | 27 | 2011 |
| Fatal elephant endotheliotropic herpesvirus infection of two young Asian elephants S Pavulraj, K Eschke, A Prahl, M Flügger, J Trimpert, PB van den Doel, ... Microorganisms 7 (10), 396, 2019 | 20 | 2019 |
| Equine herpesvirus type 4 (EHV-4) outbreak in Germany: Virological, serological, and molecular investigations S Pavulraj, K Eschke, J Theisen, S Westhoff, G Reimers, S Andreotti, ... Pathogens 10 (7), 810, 2021 | 18 | 2021 |
| High‐performance liquid chromatography with electrospray ionization ion mobility spectrometry: Characterization, data management, and applications M Zühlke, D Riebe, T Beitz, HG Löhmannsröben, S Andreotti, K Reinert, ... Journal of separation science 39 (24), 4756-4764, 2016 | 10 | 2016 |
| The duplication-loss small phylogeny problem: from cherries to trees S Andreotti, K Reinert, S Canzar Journal of Computational Biology 20 (9), 643-659, 2013 | 10 | 2013 |
| De Novo-Whole Genome Assembly of the Roborovski Dwarf Hamster (Phodopus roborovskii) Genome: An Animal Model for Severe/Critical COVID-19 S Andreotti, J Altmüller, C Quedenau, T Borodina, G Nouailles, ... Genome Biology and Evolution 14 (7), evac100, 2022 | 8 | 2022 |
| Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping N Witt, S Andreotti, A Busch, K Neubert, K Reinert, H Tomaso, ... Frontiers in microbiology 11, 636, 2020 | 8 | 2020 |
| Longitudinal omics in Syrian hamsters integrated with human data unravel complexity of moderate immune responses to SARS-CoV-2 G Nouailles, E Wyler, P Pennitz, D Postmus, D Vladimirova, J Kazmierski, ... bioRxiv, 2020.12. 18.423524, 2020 | 8 | 2020 |
| SCORE: Smart Consensus Of RNA Expression—a consensus tool for detecting differentially expressed genes in bacteria SA Wolf, L Epping, S Andreotti, K Reinert, T Semmler Bioinformatics 37 (3), 426-428, 2021 | 3 | 2021 |
| A branch-and-cut algorithm for the 2-species duplication-loss phylogeny problem S Canzar, S Andreotti arXiv preprint arXiv:1208.2698, 2012 | 2 | 2012 |
| ‘Hot Versus Cold’–Can Transcriptome Analysis of Canine Perianal Tumours Help Illustrate Their Distinct Immunophenotypic Landscapes? AFH Haake, AK Langenhagen, VM Jovanovic, S Andreotti, AD Gruber Journal of Comparative Pathology 191, 14, 2022 | 1 | 2022 |
| Longitudinal omics in Syrian hamsters integrated with human data unravel cellular effector responses to moderate COVID-19 G Nouailles, E Wyler, P Pennitz, D Postmus, D Vladrimirova, J Kazmierski, ... | 1 | 2021 |
| Guided reconstruction of full-length isoforms from short reads by cidane S Andreotti, S Canzar Epitranscriptomics: Methods and Protocols, 199-208, 2019 | 1 | 2019 |
| CIDANE: Comprehensive isoform discovery and abundance estimation S Canzar, S Andreotti, D Weese, K Reinert, GW Klau Research in Computational Molecular Biology: 19th Annual International …, 2015 | 1 | 2015 |
| Screening für mögliche Therapietargets beim caninen apokrinen Analbeutelkarzinom–Genes of Interest in der Transkriptomanalyse AFH Haake, AK Langenhagen, S Andreotti, AD Gruber Tierärztliche Praxis Ausgabe K: Kleintiere/Heimtiere 52 (03), P11, 2024 | | 2024 |
