Articles with public access mandates - Thomas SchiexLearn more
Not available anywhere: 1
Computational design of miniprotein binders
Y Bouchiba, M Ruffini, T Schiex, S Barbe
Computational Peptide Science: Methods and Protocols, 361-382, 2022
Mandates: Agence Nationale de la Recherche
Available somewhere: 25
The tomato genome sequence provides insights into fleshy fruit evolution
xx Tomato Genome Consortium
Nature 485 (7400), 635, 2012
Mandates: Department of Biotechnology, India, Government of Spain
The Medicago genome provides insight into the evolution of rhizobial symbioses
ND Young, F Debellé, GED Oldroyd, R Geurts, SB Cannon, MK Udvardi, ...
nature 480 (7378), 520-524, 2011
Mandates: Research Foundation (Flanders)
The transcriptional landscape of polyploid wheat
RH Ramírez-González, P Borrill, D Lang, SA Harrington, J Brinton, ...
Science 361 (6403), eaar6089, 2018
Mandates: US National Science Foundation, Genome Canada, Natural Sciences and …
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
H Badouin, J Gouzy, CJ Grassa, F Murat, SE Staton, L Cottret, ...
Nature 546 (7656), 148-152, 2017
Mandates: US National Science Foundation, Genome Canada
Computational protein design as an optimization problem
D Allouche, I André, S Barbe, J Davies, S de Givry, G Katsirelos, ...
Artificial Intelligence 212, 59-79, 2014
Mandates: Science Foundation Ireland
Multi-language evaluation of exact solvers in graphical model discrete optimization
B Hurley, B O’sullivan, D Allouche, G Katsirelos, T Schiex, M Zytnicki, ...
Constraints 21, 413-434, 2016
Mandates: Science Foundation Ireland
Fast search algorithms for computational protein design
S Traoré, KE Roberts, D Allouche, BR Donald, I André, T Schiex, S Barbe
Journal of computational chemistry 37 (12), 1048-1058, 2016
Mandates: US National Institutes of Health
Protein design with deep learning
M Defresne, S Barbe, T Schiex
International Journal of Molecular Sciences 22 (21), 11741, 2021
Mandates: Agence Nationale de la Recherche
Computational design of symmetrical eight-bladed β-propeller proteins
H Noguchi, C Addy, D Simoncini, S Wouters, B Mylemans, L Van Meervelt, ...
IUCrJ 6 (1), 46-55, 2019
Mandates: Research Foundation (Flanders), Agence Nationale de la Recherche
Seven amino acid types suffice to create the core fold of RNA polymerase
S Yagi, AK Padhi, J Vucinic, S Barbe, T Schiex, R Nakagawa, D Simoncini, ...
Journal of the American Chemical Society 143 (39), 15998-16006, 2021
Mandates: Agence Nationale de la Recherche
Graphical models: queries, complexity, algorithms
M Cooper, S de Givry, T Schiex
Leibniz International Proceedings in Informatics 154, 4: 1--4: 22, 2020
Mandates: Agence Nationale de la Recherche
Positive multistate protein design
J Vucinic, D Simoncini, M Ruffini, S Barbe, T Schiex
Bioinformatics 36 (1), 122-130, 2020
Mandates: Agence Nationale de la Recherche
Tractability-preserving transformations of global cost functions
D Allouche, C Bessiere, P Boizumault, S De Givry, P Gutierrez, JHM Lee, ...
Artificial Intelligence 238, 166-189, 2016
Mandates: Research Grants Council, Hong Kong
Guaranteed diversity and optimality in cost function network based computational protein design methods
M Ruffini, J Vucinic, S de Givry, G Katsirelos, S Barbe, T Schiex
Algorithms 14 (6), 168, 2021
Mandates: Agence Nationale de la Recherche
A comparative study to decipher the structural and dynamics determinants underlying the activity and thermal stability of GH-11 xylanases
J Vucinic, G Novikov, CY Montanier, C Dumon, T Schiex, S Barbe
International Journal of Molecular Sciences 22 (11), 5961, 2021
Mandates: Agence Nationale de la Recherche
Guaranteed diversity & quality for the weighted CSP
M Ruffini, J Vucinic, S de Givry, G Katsirelos, S Barbe, T Schiex
2019 IEEE 31st international conference on tools with artificial …, 2019
Mandates: Agence Nationale de la Recherche
Molecular flexibility in computational protein design: an algorithmic perspective
Y Bouchiba, J Cortés, T Schiex, S Barbe
Protein Engineering, Design and Selection 34, gzab011, 2021
Mandates: Agence Nationale de la Recherche
Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S …
H Cohen, C Hoede, F Scharte, C Coluzzi, E Cohen, I Shomer, L Mallet, ...
PLoS Pathogens 18 (4), e1010425, 2022
Mandates: Volkswagen Foundation, Agence Nationale de la Recherche, Federal Ministry of …
Cost function networks to solve large computational protein design problems
D Allouche, S Barbe, S Givry, G Katsirelos, Y Lebbah, S Loudni, A Ouali, ...
Operations Research and Simulation in healthcare, 81-102, 2021
Mandates: Agence Nationale de la Recherche
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