Articles with public access mandates - Thomas D. OttoLearn more
Available somewhere: 105
Review
Circlator: automated circularization of genome assemblies using long sequencing reads
M Hunt, ND Silva, TD Otto, J Parkhill, JA Keane, SR Harris
Genome biology 16, 1-10, 2015
Mandates: Wellcome Trust
Review
Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis
M Zhang, C Wang, TD Otto, J Oberstaller, X Liao, SR Adapa, K Udenze, ...
Science 360 (6388), eaap7847, 2018
Mandates: US National Institutes of Health, Wellcome Trust
Review
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
JOK Keith R Bradnam, Joseph N Fass, Anton Alexandrov
GigaScience 2 (10), 2013
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Canadian …
Review
Two Nonrecombining Sympatric Forms of the Human Malaria Parasite Plasmodium ovale Occur Globally
CJ Sutherland, N Tanomsing, D Nolder, M Oguike, C Jennison, ...
The Journal of infectious diseases 201 (10), 1544-1550, 2010
Mandates: US National Institutes of Health, National Institute of Health and Medical …
Review
A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni
AV Protasio, IJ Tsai, A Babbage, S Nichol, M Hunt, MA Aslett, N De Silva, ...
PLoS neglected tropical diseases 6 (1), e1455, 2012
Mandates: US National Institutes of Health
Review
REAPR: a universal tool for genome assembly evaluation
M Hunt, T Kikuchi, M Sanders, C Newbold, M Berriman, TD Otto
Genome biology 14, 1-10, 2013
Mandates: Wellcome Trust
Review
Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis
S Alivernini, L MacDonald, A Elmesmari, S Finlay, B Tolusso, MR Gigante, ...
Nature medicine 26 (8), 1295-1306, 2020
Mandates: Versus Arthritis, UK, UK Medical Research Council, Wellcome Trust …
Review
A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium
A Sinha, KR Hughes, KK Modrzynska, TD Otto, C Pfander, NJ Dickens, ...
Nature 507 (7491), 253-257, 2014
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, UK …
Review
A novel multiple-stage antimalarial agent that inhibits protein synthesis
B Baragaña, I Hallyburton, MCS Lee, NR Norcross, R Grimaldi, TD Otto, ...
Nature 522 (7556), 315-320, 2015
Mandates: Bill & Melinda Gates Foundation, US National Institutes of Health, UK …
Review
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ...
Molecular microbiology 76 (1), 12-24, 2010
Mandates: US National Institutes of Health
Review
Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ...
PLoS pathogens 7 (9), e1002219, 2011
Mandates: Swedish Research Council
Review
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
TD Otto, U Böhme, AP Jackson, M Hunt, B Franke-Fayard, ...
BMC biology 12, 1-18, 2014
Mandates: UK Medical Research Council, Wellcome Trust, Netherlands Organisation for …
Review
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
AJ Page, N De Silva, M Hunt, MA Quail, J Parkhill, SR Harris, TD Otto, ...
Microbial genomics 2 (8), e000083, 2016
Mandates: Wellcome Trust
Review
A comprehensive evaluation of assembly scaffolding tools
M Hunt, C Newbold, M Berriman, TD Otto
Genome biology 15, 1-15, 2014
Mandates: Wellcome Trust
Review
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
YH Woo, H Ansari, TD Otto, CM Klinger, M Kolisko, J Michálek, A Saxena, ...
elife 4, e06974, 2015
Mandates: US National Institutes of Health, Australian Research Council, National …
Review
Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis
A Claessens, WL Hamilton, M Kekre, TD Otto, A Faizullabhoy, JC Rayner, ...
PLoS genetics 10 (12), e1004812, 2014
Mandates: US National Institutes of Health, UK Medical Research Council, Wellcome Trust
Review
Genomic analysis of the causative agents of coccidiosis in domestic chickens
AJ Reid, DP Blake, HR Ansari, K Billington, HP Browne, J Bryant, M Dunn, ...
Genome research 24 (10), 1676-1685, 2014
Mandates: Canadian Institutes of Health Research, UK Biotechnology and Biological …
Review
Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution
GG Rutledge, U Böhme, M Sanders, AJ Reid, JA Cotton, ...
Nature 542 (7639), 101-104, 2017
Mandates: National Health and Medical Research Council, Australia, UK Medical Research …
Review
IVA: accurate de novo assembly of RNA virus genomes
M Hunt, A Gall, SH Ong, J Brener, B Ferns, P Goulder, E Nastouli, ...
Bioinformatics 31 (14), 2374-2376, 2015
Mandates: National Institute for Health Research, UK, Wellcome Trust
Review
Genome organization and DNA accessibility control antigenic variation in trypanosomes
LSM Müller, RO Cosentino, KU Förstner, J Guizetti, C Wedel, N Kaplan, ...
Nature 563 (7729), 121, 2018
Mandates: German Research Foundation, Wellcome Trust, European Commission
Publication and funding information is determined automatically by a computer program