| Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant B Li, A Deng, K Li, Y Hu, Z Li, Y Shi, Q Xiong, Z Liu, Q Guo, L Zou, ... Nature communications 13 (1), 460, 2022 | 492 | 2022 |
| Patients’, clinicians’ and the research communities’ priorities for treatment research: there is an important mismatch S Crowe, M Fenton, M Hall, K Cowan, I Chalmers Research involvement and engagement 1, 1-10, 2015 | 327 | 2015 |
| SARS-CoV-2 within-host diversity and transmission KA Lythgoe, M Hall, L Ferretti, M de Cesare, G MacIntyre-Cockett, ... Science 372 (6539), eabg0821, 2021 | 324 | 2021 |
| OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing R Hinch, WJM Probert, A Nurtay, M Kendall, C Wymant, M Hall, K Lythgoe, ... PLoS computational biology 17 (7), e1009146, 2021 | 239 | 2021 |
| PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ... Molecular biology and evolution 35 (3), 719-733, 2018 | 161 | 2018 |
| Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set M Hall, M Woolhouse, A Rambaut PLOS Computational Biology 11 (12), e1004613, 2015 | 116 | 2015 |
| Revealing the micro-scale signature of endemic zoonotic disease transmission in an African urban setting H Bourhy, E Nakouné, M Hall, Nouvellet, Pierre, A Lepelletier, C Talbi, ... PLOS Pathogens 12 (4), e1005525, 2016 | 90 | 2016 |
| COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study Infection 49 (5), 889-905, 2021 | 88 | 2021 |
| Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ... Virus evolution 4 (1), vey007, 2018 | 80 | 2018 |
| The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study MD Hall, MEJ Woolhouse, A Rambaut Virus Evolution 2 (1), vew003, 2016 | 78 | 2016 |
| Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda O Ratmann, J Kagaayi, M Hall, T Golubchick, G Kigozi, X Xi, C Wymant, ... The lancet HIV 7 (3), e173-e183, 2020 | 74 | 2020 |
| Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ... Molecular biology and evolution 34 (1), 185-203, 2017 | 73 | 2017 |
| Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe F Blanquart, C Wymant, M Cornelissen, A Gall, M Bakker, D Bezemer, ... PLoS biology 15 (6), e2001855, 2017 | 69 | 2017 |
| A highly virulent variant of HIV-1 circulating in the Netherlands C Wymant, D Bezemer, F Blanquart, L Ferretti, A Gall, M Hall, T Golubchik, ... Science 375 (6580), 540-545, 2022 | 62 | 2022 |
| Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis O Ratmann, MK Grabowski, M Hall, T Golubchik, C Wymant, ... Nature communications 10 (1), 1411, 2019 | 62 | 2019 |
| A comprehensive genomics solution for HIV surveillance and clinical monitoring in low-income settings D Bonsall, T Golubchik, M de Cesare, M Limbada, B Kosloff, ... Journal of clinical microbiology 58 (10), 10.1128/jcm. 00382-20, 2020 | 59 | 2020 |
| Phylogeography of Rift Valley Fever virus in Africa and the Arabian Peninsula S Abdallah M, A Townsend Peterson, M Hall PLOS Neglected Tropical Diseases 11 (1), e0005226, 2017 | 55 | 2017 |
| Reconstructing geographical movements and host species transitions of foot-and-mouth disease virus serotype SAT 2 MD Hall, NJ Knowles, J Wadsworth, A Rambaut, MEJ Woolhouse MBio 4 (5), 10.1128/mbio. 00591-13, 2013 | 55 | 2013 |
| A gene location for the inheritance of the cataract Fraser (CatFr) mouse congenital cataract AL Muggleton-Harris, MFW Festing, M Hall Genetics Research 49 (3), 235-238, 1987 | 54 | 1987 |
| Improved characterisation of MRSA transmission using within-host bacterial sequence diversity MD Hall, MTG Holden, P Srisomang, W Mahavanakul, V Wuthiekanun, ... Elife 8, e46402, 2019 | 53 | 2019 |
Christophe FraserPandemic Sciences Institute, Nuffield Department of Medicine, University of OxfordVerified email at ndm.ox.ac.uk