Articles with public access mandates - Daniel TranchinaLearn more
Available somewhere: 15
Recovery of sparse translation-invariant signals with continuous basis pursuit
C Ekanadham, D Tranchina, E Simoncelli
Signal Processing, IEEE Transactions on 59 (10), 4735-4744, 2011
Mandates: Howard Hughes Medical Institute
A unified framework and method for automatic neural spike identification
C Ekanadham, D Tranchina, EP Simoncelli
Journal of neuroscience methods 222, 47-55, 2014
Mandates: Howard Hughes Medical Institute
Plasticity regulators modulate specific root traits in discrete nitrogen environments
ML Gifford, JA Banta, MS Katari, J Hulsmans, L Chen, D Ristova, ...
PLoS genetics 9 (9), e1003760, 2013
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Channel modulation and the mechanism of light adaptation in mouse rods
J Chen, ML Woodruff, T Wang, FA Concepcion, D Tranchina, GL Fain
Journal of Neuroscience 30 (48), 16232-16240, 2010
Mandates: US National Institutes of Health
A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis
G Krouk, D Tranchina, L Lejay, AA Cruikshank, D Shasha, GM Coruzzi, ...
PLoS computational biology 5 (3), e1000326, 2009
Mandates: US National Institutes of Health
A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive" biomodule"
D Nero, G Krouk, D Tranchina, GM Coruzzi
BMC Systems Biology 3, 1-17, 2009
Mandates: US National Institutes of Health
Modulation of mouse rod response decay by rhodopsin kinase and recoverin
CK Chen, ML Woodruff, FS Chen, Y Chen, MC Cilluffo, D Tranchina, ...
Journal of Neuroscience 32 (45), 15998-16006, 2012
Mandates: US National Institutes of Health
Population density approach for discrete mRNA distributions in generalized switching models for stochastic gene expression
AR Stinchcombe, CS Peskin, D Tranchina
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 85 (6 …, 2012
Mandates: US National Institutes of Health
Fluctuating environments maintain genetic diversity through neutral fitness effects and balancing selection
F Abdul-Rahman, D Tranchina, D Gresham
Molecular Biology and Evolution 38 (10), 4362-4375, 2021
Mandates: US National Science Foundation, US National Institutes of Health
Kinetics of inhibitory feedback from horizontal cells to photoreceptors: implications for an ephaptic mechanism
TJ Warren, MJ Van Hook, D Tranchina, WB Thoreson
Journal of Neuroscience 36 (39), 10075-10088, 2016
Mandates: US National Institutes of Health
Water impacts nutrient dose responses genome-wide to affect crop production
J Swift, M Adame, D Tranchina, A Henry, GM Coruzzi
Nature communications 10 (1), 1374, 2019
Mandates: US National Science Foundation
A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory
R Athanasiadou, B Neymotin, N Brandt, W Wang, L Christiaen, ...
PLoS computational biology 15 (3), e1006794, 2019
Mandates: US National Institutes of Health
Growth rate-dependent global amplification of gene expression
R Athanasiadou, B Neymotin, N Brandt, D Miller, D Tranchina, D Gresham
BioRxiv, 044735, 2016
Mandates: US National Science Foundation, US National Institutes of Health
In Silico Evaluation of Predicted Regulatory Interactions in Arabidopsis thaliana
D Nero, MS Katari, J Kelfer, D Tranchina, GM Coruzzi
BMC bioinformatics 10, 1-15, 2009
Mandates: US National Institutes of Health
Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescence
S Sun, D Tranchina, D Gresham
bioRxiv, 2023
Mandates: US National Institutes of Health
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