Global landscape of cell envelope protein complexes in Escherichia coli M Babu, C Bundalovic-Torma, C Calmettes, S Phanse, Q Zhang, Y Jiang, ... Nature biotechnology 36 (1), 103-112, 2018 | 133 | 2018 |
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes JT Reese, H Blau, E Casiraghi, T Bergquist, JJ Loomba, TJ Callahan, ... EBioMedicine 87, 2023 | 104 | 2023 |
The yeast two-hybrid system: a tool for mapping protein–protein interactions J Mehla, JH Caufield, P Uetz Cold Spring Harbor Protocols 2015 (5), pdb. top083345, 2015 | 63 | 2015 |
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning JH Caufield, H Hegde, V Emonet, NL Harris, MP Joachimiak, ... Bioinformatics 40 (3), btae104, 2024 | 59 | 2024 |
A comparison of two-hybrid approaches for detecting protein–protein interactions J Mehla, JH Caufield, N Sakhawalkar, P Uetz Methods in enzymology 586, 333-358, 2017 | 58 | 2017 |
A comparison and optimization of yeast two-hybrid systems JH Caufield, N Sakhawalkar, P Uetz Methods 58 (4), 317-324, 2012 | 57 | 2012 |
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 56 | 2022 |
Clinical temporal relation extraction with probabilistic soft logic regularization and global inference Y Zhou, Y Yan, R Han, JH Caufield, KW Chang, Y Sun, P Ping, W Wang Proceedings of the AAAI Conference on Artificial Intelligence 35 (16), 14647 …, 2021 | 54 | 2021 |
Studying protein complexes by the yeast two-hybrid system SV Rajagopala, P Sikorski, JH Caufield, A Tovchigrechko, P Uetz Methods 58 (4), 392-399, 2012 | 39 | 2012 |
The Human Phenotype Ontology in 2024: phenotypes around the world. F Castellanos, J Caufield, L Chan, C Chute, J Cruz-Rojo, N Dahan-Oliel, ... Nucleic Acids Research 52 (D1), 2024 | 36* | 2024 |
A reference set of curated biomedical data and metadata from clinical case reports JH Caufield, Y Zhou, AO Garlid, SP Setty, DA Liem, Q Cao, JM Lee, ... Scientific data 5 (1), 1-18, 2018 | 34 | 2018 |
Specific N‐terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria EA Wall, JH Caufield, CE Lyons, KA Manning, T Dokland, GE Christie Molecular microbiology 95 (2), 258-269, 2015 | 32 | 2015 |
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease DA Liem, S Murali, D Sigdel, Y Shi, X Wang, J Shen, H Choi, JH Caufield, ... American Journal of Physiology-Heart and Circulatory Physiology 315 (4 …, 2018 | 28 | 2018 |
Bacterial protein meta-interactomes predict cross-species interactions and protein function JH Caufield, C Wimble, S Shary, S Wuchty, P Uetz Bmc Bioinformatics 18, 1-14, 2017 | 25 | 2017 |
Mapping protein–protein interactions using yeast two-hybrid assays J Mehla, JH Caufield, P Uetz Cold Spring Harbor Protocols 2015 (5), pdb. prot086157, 2015 | 24 | 2015 |
Progress toward a universal biomedical data translator K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ... Clinical and Translational Science 15 (8), 1838-1847, 2022 | 23 | 2022 |
The protein interactome of mycobacteriophage Giles predicts functions for unknown proteins J Mehla, RM Dedrick, JH Caufield, R Siefring, M Mair, A Johnson, ... Journal of bacteriology 197 (15), 2508-2516, 2015 | 23 | 2015 |
Protein complexes in bacteria JH Caufield, M Abreu, C Wimble, P Uetz PLoS computational biology 11 (2), e1004107, 2015 | 22 | 2015 |
Clinical named entity recognition using contextualized token representations Y Zhou, C Ju, JH Caufield, K Shih, C Chen, Y Sun, KW Chang, P Ping, ... arXiv preprint arXiv:2106.12608, 2021 | 20 | 2021 |
On the limitations of large language models in clinical diagnosis JT Reese, D Danis, JH Caufield, T Groza, E Casiraghi, G Valentini, ... medRxiv, 2023 | 17 | 2023 |