Articles with public access mandates - A. Murat ErenLearn more
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
Mandates: US National Science Foundation, US Department of Energy, US National …
Anvi’o: an advanced analysis and visualization platform for ‘omics data
AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ...
PeerJ 3, e1319, 2015
Mandates: UK Medical Research Council
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
AM Eren, L Maignien, WJ Sul, LG Murphy, SL Grim, HG Morrison, ...
Methods in Ecology and Evolution 4 (12), 1111-1119, 2013
Mandates: US National Institutes of Health
The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes
I Martínez, JC Stegen, MX Maldonado-Gómez, AM Eren, PM Siba, ...
Cell reports 11 (4), 527-538, 2015
Mandates: US Department of Energy
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
AM Eren, HG Morrison, PJ Lescault, J Reveillaud, JH Vineis, ML Sogin
The ISME journal 9 (4), 968-979, 2015
Mandates: US National Institutes of Health
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
Mandates: US National Institutes of Health
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature Microbiology, 1, 2018
Mandates: US National Institutes of Health, Netherlands Organisation for Scientific …
Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host
M Meisel, R Hinterleitner, A Pacis, L Chen, ZM Earley, T Mayassi, ...
Nature 557 (7706), 580-584, 2018
Mandates: US National Institutes of Health, Austrian Science Fund, Canadian Institutes …
Oligotyping analysis of the human oral microbiome
AM Eren, GG Borisy, SM Huse, JLM Welch
Proceedings of the National Academy of Sciences 111 (28), E2875-E2884, 2014
Mandates: US National Institutes of Health
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
TO Delmont, AM Eren
PeerJ 6, e4320, 2018
Mandates: US National Institutes of Health
A filtering method to generate high quality short reads using Illumina paired-end technology
AM Eren, JH Vineis, HG Morrison, ML Sogin
PloS one 8 (6), e66643, 2013
Mandates: US National Institutes of Health
Accurate and complete genomes from metagenomes
LX Chen, K Anantharaman, A Shaiber, AM Eren, JF Banfield
Genome Research 30 (3), 315-333, 2020
Mandates: US Department of Energy, US National Institutes of Health, Genome Canada …
Extensive modulation of the fecal metagenome in children with Crohn’s disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
Mandates: UK Medical Research Council, UK Natural Environment Research Council
Sewage reflects the microbiomes of human populations
RJ Newton, SL McLellan, DK Dila, JH Vineis, HG Morrison, AM Eren, ...
MBio 6 (2), e02574-14, 2015
Mandates: US National Institutes of Health
Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation
AM Eren, M Zozaya, CM Taylor, SE Dowd, DH Martin, MJ Ferris
PloS one 6 (10), e26732, 2011
Mandates: US National Institutes of Health
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ...
Nature microbiology 4 (10), 1727-1736, 2019
Mandates: US National Science Foundation, US Department of Energy, US National …
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
M Bálint, M Bahram, AM Eren, K Faust, JA Fuhrman, B Lindahl, RB O'hara, ...
FEMS microbiology reviews 40 (5), 686-700, 2016
Mandates: German Research Foundation
Vaginal microbiome in early pregnancy and subsequent risk of spontaneous preterm birth: a case–control study
N Tabatabaei, AM Eren, LB Barreiro, V Yotova, A Dumaine, C Allard, ...
BJOG: An International Journal of Obstetrics & Gynaecology 126 (3), 349-358, 2019
Mandates: Canadian Institutes of Health Research, Fonds de recherche du Québec - Santé
DESMAN: a new tool for de novo extraction of strains from metagenomes
C Quince, TO Delmont, S Raguideau, J Alneberg, AE Darling, G Collins, ...
Genome biology 18, 1-22, 2017
Mandates: UK Engineering and Physical Sciences Research Council, UK Medical Research …
Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis
M Zozaya, MJ Ferris, JD Siren, R Lillis, L Myers, MJ Nsuami, AM Eren, ...
Microbiome 4 (1), 1-10, 2016
Mandates: US National Institutes of Health
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