| Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion AT Satpathy, JM Granja, KE Yost, Y Qi, F Meschi, GP McDermott, ... Nature biotechnology 37 (8), 925-936, 2019 | 725 | 2019 |
| Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network D Chasman, YH Ho, DB Berry, CM Nemec, ME MacGilvray, J Hose, ... Molecular systems biology 10 (11), 759, 2014 | 102 | 2014 |
| Emerging views on the CTD code DW Zhang, JB Rodríguez-Molina, JR Tietjen, CM Nemec, AZ Ansari Genetics research international 2012 (1), 347214, 2012 | 75 | 2012 |
| Integrated single-cell transcriptomics and chromatin accessibility analysis reveals regulators of mammary epithelial cell identity N Pervolarakis, QH Nguyen, J Williams, Y Gong, G Gutierrez, P Sun, ... Cell reports 33 (3), 2020 | 42 | 2020 |
| Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner CM Nemec, F Yang, JM Gilmore, C Hintermair, YH Ho, SC Tseng, ... Proceedings of the National Academy of Sciences 114 (20), E3944-E3953, 2017 | 39 | 2017 |
| Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner CM Nemec, AK Singh, A Ali, SC Tseng, K Syal, KJ Ringelberg, YH Ho, ... Nature chemical biology 15 (2), 123-131, 2019 | 29 | 2019 |
| Methods and systems to minimize barcode exchange J Bell, J Lee, C Nemec, F Meschi US Patent App. 16/530,930, 2020 | 27 | 2020 |
| Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data Z Duren, WS Lu, JG Arthur, P Shah, J Xin, F Meschi, ML Li, CM Nemec, ... Nature Communications 12 (1), 4763, 2021 | 22 | 2021 |
| The Space Omics and Medical Atlas (SOMA) and international astronaut biobank EG Overbey, JK Kim, BT Tierney, J Park, N Houerbi, AG Lucaci, ... Nature, 1-3, 2024 | 8 | 2024 |
| Integrated single-cell transcriptomics and chromatin accessibility analysis reveals novel regulators of mammary epithelial cell identity N Pervolarakis, QH Nguyen, G Gutierrez, P Sun, D Jhutty, GXY Zheng, ... bioRxiv, 740746, 2019 | 6 | 2019 |
| Comparing 10x Genomics single-cell 3’and 5’assay in short-and long-read sequencing J Hsu, J Jarroux, A Joglekar, JP Romero, C Nemec, D Reyes, A Royall, ... BioRxiv, 2022.10. 27.514084, 2022 | 4 | 2022 |
| Massively parallel simultaneous profiling of the transcriptomic and epigenomic landscape at single cell resolution S Maheshwari, S Chatterjee, J Sapida, J Shuga, L Wang, Y Kang, B Olsen, ... 10x Genomics https://pages. 10xgenomics. com/rs/446-PBO-704/images …, 2020 | 1 | 2020 |
| Methods, systems, and kits for dual indexing nucleic acids CM Nemec US Patent App. 18/628,080, 2024 | | 2024 |
| Non-canonical Kinases Expand the RNA Polymerase II CTD Code C Nemec University of Wisconsin--Madison, 2016 | | 2016 |
| High cross-pathway connectivity in the yeast stress-activated signaling network D Chasman, YH Ho, DB Berry, CM Nemec, ME MacGilvray, J Hose, ... | | |