PrDOS: prediction of disordered protein regions from amino acid sequence T Ishida, K Kinoshita Nucleic acids research 35 (suppl_2), W460-W464, 2007 | 915 | 2007 |
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis T Obayashi, K Kinoshita, K Nakai, M Shibaoka, S Hayashi, M Saeki, ... Nucleic acids research 35 (suppl_1), D863-D869, 2007 | 443 | 2007 |
ATTED-II provides coexpressed gene networks for Arabidopsis T Obayashi, S Hayashi, M Saeki, H Ohta, K Kinoshita Nucleic acids research 37 (suppl_1), D987-D991, 2009 | 431 | 2009 |
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ... Nature communications 6 (1), 8018, 2015 | 430 | 2015 |
The Tohoku medical megabank project: design and mission S Kuriyama, N Yaegashi, F Nagami, T Arai, Y Kawaguchi, N Osumi, ... Journal of epidemiology 26 (9), 493-511, 2016 | 300 | 2016 |
Prediction of disordered regions in proteins based on the meta approach T Ishida, K Kinoshita Bioinformatics 24 (11), 1344-1348, 2008 | 295 | 2008 |
ATTED-II in 2018: a plant coexpression database based on investigation of the statistical property of the mutual rank index T Obayashi, Y Aoki, S Tadaka, Y Kagaya, K Kinoshita Plant and Cell Physiology 59 (1), e3-e3, 2018 | 293 | 2018 |
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression T Obayashi, K Kinoshita DNA research 16 (5), 249-260, 2009 | 254 | 2009 |
Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site K Kinoshita, H Nakamura Protein Science 12 (8), 1589-1595, 2003 | 209 | 2003 |
ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression Y Aoki, Y Okamura, S Tadaka, K Kinoshita, T Obayashi Plant and Cell Physiology 57 (1), e5-e5, 2016 | 199 | 2016 |
COXPRESdb: a database of coexpressed gene networks in mammals T Obayashi, S Hayashi, M Shibaoka, M Saeki, H Ohta, K Kinoshita Nucleic acids research 36 (suppl_1), D77-D82, 2007 | 183 | 2007 |
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants T Obayashi, K Nishida, K Kasahara, K Kinoshita Plant and cell physiology 52 (2), 213-219, 2011 | 180 | 2011 |
Hub promiscuity in protein-protein interaction networks A Patil, K Kinoshita, H Nakamura International journal of molecular sciences 11 (4), 1930-1943, 2010 | 180 | 2010 |
Identification of protein functions from a molecular surface database, eF-site K Kinoshita, J Furui, H Nakamura Journal of structural and functional genomics 2, 9-22, 2002 | 172 | 2002 |
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems Y Okamura, Y Aoki, T Obayashi, S Tadaka, S Ito, T Narise, K Kinoshita Nucleic acids research 43 (D1), D82-D86, 2015 | 165 | 2015 |
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 157 | 2011 |
Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein–mononucleotide complexes K Kinoshita, K Sadanami, A Kidera, N Go Protein engineering 12 (1), 11-14, 1999 | 150 | 1999 |
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference T Obayashi, Y Kagaya, Y Aoki, S Tadaka, K Kinoshita Nucleic acids research 47 (D1), D55-D62, 2019 | 146 | 2019 |
eF-site and PDBjViewer: database and viewer for protein functional sites K Kinoshita, H Nakamura Bioinformatics 20 (8), 1329-1330, 2004 | 141 | 2004 |
Cohort profile: Tohoku medical megabank project birth and three-generation cohort study (TMM BirThree cohort study): rationale, progress and perspective S Kuriyama, H Metoki, M Kikuya, T Obara, M Ishikuro, C Yamanaka, ... International journal of epidemiology 49 (1), 18-19m, 2020 | 140 | 2020 |