| Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023-1024, 2017 | 375 | 2017 |
| Toward a gold standard for benchmarking gene set enrichment analysis L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ... Briefings in bioinformatics 22 (1), 545-556, 2021 | 111 | 2021 |
| Software for the integration of multiomics experiments in bioconductor M Ramos, L Schiffer, A Re, R Azhar, A Basunia, C Rodriguez, T Chan, ... Cancer research 77 (21), e39-e42, 2017 | 105 | 2017 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 99 | 2022 |
| Racial and Ethnic Subgroup Disparities in Hypertension Prevalence, New York City Health and Nutrition Examination Survey, 2013–2014 K Fei, JS Rodriguez-Lopez, M Ramos, N Islam, C Trinh-Shevrin, SY Stella, ... Preventing chronic disease 14, 2017 | 96* | 2017 |
| Multiomic analysis of subtype evolution and heterogeneity in high-grade serous ovarian carcinoma L Geistlinger, S Oh, M Ramos, L Schiffer, RS LaRue, CM Henzler, ... Cancer research 80 (20), 4335-4345, 2020 | 81 | 2020 |
| Multiomic integration of public oncology databases in bioconductor M Ramos, L Geistlinger, S Oh, L Schiffer, R Azhar, H Kodali, I de Bruijn, ... JCO clinical cancer informatics 1, 958-971, 2020 | 71 | 2020 |
| Public data and open source tools for multi-assay genomic investigation of disease L Kannan, M Ramos, A Re, N El-Hachem, Z Safikhani, DMA Gendoo, ... Briefings in bioinformatics 17 (4), 603-615, 2016 | 61 | 2016 |
| HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor L Schiffer, R Azhar, L Shepherd, M Ramos, L Geistlinger, C Huttenhower, ... American journal of epidemiology 188 (6), 1023-1026, 2019 | 31 | 2019 |
| Reliable analysis of clinical tumor-only whole-exome sequencing data S Oh, L Geistlinger, M Ramos, M Morgan, L Waldron, M Riester JCO Clinical Cancer Informatics 4, 321-335, 2020 | 26 | 2020 |
| CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes V da Silva, M Ramos, M Groenen, R Crooijmans, A Johansson, ... Bioinformatics 36 (3), 972-973, 2020 | 23 | 2020 |
| HGNChelper: identification and correction of invalid gene symbols for human and mouse S Oh, J Abdelnabi, R Al-Dulaimi, A Aggarwal, M Ramos, S Davis, ... F1000Research 9, 2020 | 21 | 2020 |
| The Doppelgänger effect: Hidden duplicates in databases of transcriptome profiles L Waldron, M Riester, M Ramos, G Parmigiani, M Birrer Journal of the National Cancer Institute 108 (11), djw146, 2016 | 19 | 2016 |
| Deliberative and intuitive risk perceptions as predictors of colorectal cancer screening over time JL Hay, M Ramos, Y Li, S Holland, D Brennessel, MM Kemeny Journal of behavioral medicine 39, 65-74, 2016 | 19 | 2016 |
| A longitudinal analysis of albendazole treatment effect on neurocysticercosis cyst evolution using multistate models MA Montgomery, M Ramos, EA Kelvin, A Carpio, A Jaramillo, WA Hauser, ... Transactions of the Royal Society of Tropical Medicine and Hygiene 113 (12 …, 2019 | 14 | 2019 |
| A pilot study of skin cancer risk reduction behaviors, cancer communication, and skin cancer beliefs in Hispanics S Torres, M Ramos, R Leverence, D Bowen, M Berwick, J Hay Calif J Health Promot 12 (1), 95-100, 2014 | 13 | 2014 |
| Global alliance for genomics and health meets bioconductor: Toward reproducible and agile cancer genomics at cloud scale VJ Carey, M Ramos, BJ Stubbs, S Gopaulakrishnan, S Oh, N Turaga, ... JCO Clinical Cancer Informatics 4, 472-479, 2020 | 6 | 2020 |
| GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases S Oh, L Geistlinger, M Ramos, D Blankenberg, M van den Beek, ... Nature Communications 13 (1), 3695, 2022 | 4 | 2022 |
| Curated single cell multimodal landmark datasets for R/Bioconductor KB Eckenrode, D Righelli, M Ramos, R Argelaguet, C Vanderaa, ... PLOS Computational Biology 19 (8), e1011324, 2023 | 3 | 2023 |
| Improving Accessibility of the Human Microbiome Project Data Through Integration With R/Bioconductor SN Waldron L, Schiffer L, Azhar R, Ramos M, Geistlinger L Am J Epidemiol., 2019 | 3* | 2019 |
Levi WaldronCity University of New York Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu