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Xu Shi
Xu Shi
Principal Scientist I, AbbVie Inc.
Verified email at yale.edu
Title
Cited by
Cited by
Year
Mapping genomic loci implicates genes and synaptic biology in schizophrenia
V Trubetskoy, AF Pardiñas, T Qi, G Panagiotaropoulou, S Awasthi, ...
Nature 604 (7906), 502-508, 2022
14382022
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), eaat8127, 2018
10792018
Comprehensive functional genomic resource and integrative model for the human brain
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
Science 362 (6420), eaat8464, 2018
8632018
Integrative functional genomic analysis of human brain development and neuropsychiatric risks
M Li, G Santpere, Y Imamura Kawasawa, OV Evgrafov, FO Gulden, ...
Science 362 (6420), eaat7615, 2018
6742018
A single-cell transcriptomic atlas of human neocortical development during mid-gestation
D Polioudakis, L de la Torre-Ubieta, J Langerman, AG Elkins, X Shi, ...
Neuron 103 (5), 785-801. e8, 2019
4242019
Transcriptome and epigenome landscape of human cortical development modeled in organoids
A Amiri, G Coppola, S Scuderi, F Wu, T Roychowdhury, F Liu, ...
Science 362 (6420), eaat6720, 2018
2772018
Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders
B Hu, H Won, W Mah, RB Park, B Kassim, K Spiess, A Kozlenkov, ...
Nature communications 12 (1), 3968, 2021
662021
Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming
Y Suryo Rahmanto, W Shen, X Shi, X Chen, Y Yu, ZC Yu, T Miyamoto, ...
Nature communications 11 (1), 2717, 2020
572020
Revealing the brain's molecular architecture
PsychENCODE Consortium*
Science 362 (6420), 1262-1263, 2018
492018
Demonstration of a highly efficient RF energy harvester for Wi-Fi signals
H Hong, X Cai, X Shi, X Zhu
2012 International Conference on Microwave and Millimeter Wave Technology …, 2012
362012
VISTA is an activating receptor in human monocytes
BM Rogers, L Smith, Z Dezso, X Shi, E DiGiammarino, D Nguyen, ...
Journal of Experimental Medicine 218 (8), e20201601, 2021
282021
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ...
Cell 186 (7), 1493-1511. e40, 2023
242023
Comprehensive functional genomic resource and integrative model for the human brain. Science 362, eaat8464
D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ...
162018
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method
X Shi, RO Barnes, L Chen, AN Shajahan-Haq, L Hilakivi-Clarke, R Clarke, ...
Bioinformatics 31 (14), 2412-2414, 2015
132015
Spleen tyrosine kinase activity regulates epidermal growth factor receptor signaling pathway in ovarian cancer
Y Yu, YS Rahmanto, YA Shen, L Ardighieri, B Davidson, S Gaillard, ...
EBioMedicine, 2019
102019
CyNetSVM: A cytoscape app for cancer biomarker identification using network constrained support vector machines
X Shi, S Banerjee, L Chen, L Hilakivi-Clarke, R Clarke, J Xuan
PloS one 12 (1), e0170482, 2017
102017
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification
X Chen, X Shi, L Hilakivi-Clarke, AN Shajahan-Haq, R Clarke, J Xuan
Bioinformatics 33 (2), 177-183, 2017
92017
BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency
X Shi, X Wang, A Shajahan, L Hilakivi-Clarke, R Clarke, J Xuan
BMC genomics 16, 1-10, 2015
92015
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks
X Shi, J Gu, X Chen, A Shajahan, L Hilakivi-Clarke, R Clarke, J Xuan
BMC Systems Biology 7, 1-12, 2013
92013
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data
X Shi, X Wang, TL Wang, L Hilakivi-Clarke, R Clarke, J Xuan
Bioinformatics 34 (1), 56-63, 2018
82018
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Articles 1–20