Mapping genomic loci implicates genes and synaptic biology in schizophrenia V Trubetskoy, AF Pardiñas, T Qi, G Panagiotaropoulou, S Awasthi, ... Nature 604 (7906), 502-508, 2022 | 1438 | 2022 |
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ... Science 362 (6420), eaat8127, 2018 | 1079 | 2018 |
Comprehensive functional genomic resource and integrative model for the human brain D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ... Science 362 (6420), eaat8464, 2018 | 863 | 2018 |
Integrative functional genomic analysis of human brain development and neuropsychiatric risks M Li, G Santpere, Y Imamura Kawasawa, OV Evgrafov, FO Gulden, ... Science 362 (6420), eaat7615, 2018 | 674 | 2018 |
A single-cell transcriptomic atlas of human neocortical development during mid-gestation D Polioudakis, L de la Torre-Ubieta, J Langerman, AG Elkins, X Shi, ... Neuron 103 (5), 785-801. e8, 2019 | 424 | 2019 |
Transcriptome and epigenome landscape of human cortical development modeled in organoids A Amiri, G Coppola, S Scuderi, F Wu, T Roychowdhury, F Liu, ... Science 362 (6420), eaat6720, 2018 | 277 | 2018 |
Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders B Hu, H Won, W Mah, RB Park, B Kassim, K Spiess, A Kozlenkov, ... Nature communications 12 (1), 3968, 2021 | 66 | 2021 |
Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming Y Suryo Rahmanto, W Shen, X Shi, X Chen, Y Yu, ZC Yu, T Miyamoto, ... Nature communications 11 (1), 2717, 2020 | 57 | 2020 |
Revealing the brain's molecular architecture PsychENCODE Consortium* Science 362 (6420), 1262-1263, 2018 | 49 | 2018 |
Demonstration of a highly efficient RF energy harvester for Wi-Fi signals H Hong, X Cai, X Shi, X Zhu 2012 International Conference on Microwave and Millimeter Wave Technology …, 2012 | 36 | 2012 |
VISTA is an activating receptor in human monocytes BM Rogers, L Smith, Z Dezso, X Shi, E DiGiammarino, D Nguyen, ... Journal of Experimental Medicine 218 (8), e20201601, 2021 | 28 | 2021 |
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 24 | 2023 |
Comprehensive functional genomic resource and integrative model for the human brain. Science 362, eaat8464 D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro, D Clarke, M Gu, ... | 16 | 2018 |
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method X Shi, RO Barnes, L Chen, AN Shajahan-Haq, L Hilakivi-Clarke, R Clarke, ... Bioinformatics 31 (14), 2412-2414, 2015 | 13 | 2015 |
Spleen tyrosine kinase activity regulates epidermal growth factor receptor signaling pathway in ovarian cancer Y Yu, YS Rahmanto, YA Shen, L Ardighieri, B Davidson, S Gaillard, ... EBioMedicine, 2019 | 10 | 2019 |
CyNetSVM: A cytoscape app for cancer biomarker identification using network constrained support vector machines X Shi, S Banerjee, L Chen, L Hilakivi-Clarke, R Clarke, J Xuan PloS one 12 (1), e0170482, 2017 | 10 | 2017 |
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification X Chen, X Shi, L Hilakivi-Clarke, AN Shajahan-Haq, R Clarke, J Xuan Bioinformatics 33 (2), 177-183, 2017 | 9 | 2017 |
BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency X Shi, X Wang, A Shajahan, L Hilakivi-Clarke, R Clarke, J Xuan BMC genomics 16, 1-10, 2015 | 9 | 2015 |
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks X Shi, J Gu, X Chen, A Shajahan, L Hilakivi-Clarke, R Clarke, J Xuan BMC Systems Biology 7, 1-12, 2013 | 9 | 2013 |
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data X Shi, X Wang, TL Wang, L Hilakivi-Clarke, R Clarke, J Xuan Bioinformatics 34 (1), 56-63, 2018 | 8 | 2018 |