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Strong signatures of selection in the domestic pig genome CJ Rubin, HJ Megens, AM Barrio, K Maqbool, S Sayyab, D Schwochow, ... Proceedings of the National Academy of Sciences 109 (48), 19529-19536, 2012 | 653 | 2012 |
Endogenous non-retroviral RNA virus elements in mammalian genomes M Horie, T Honda, Y Suzuki, Y Kobayashi, T Daito, T Oshida, K Ikuta, ... Nature 463 (7277), 84-87, 2010 | 638 | 2010 |
Effects of retroviruses on host genome function P Jern, JM Coffin Annual review of genetics 42 (1), 709-732, 2008 | 604 | 2008 |
Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy P Jern, GO Sperber, J Blomberg Retrovirology 2, 1-12, 2005 | 223 | 2005 |
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing A Martinez Barrio, S Lamichhaney, G Fan, N Rafati, M Pettersson, ... elife 5, e12081, 2016 | 189 | 2016 |
Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance P Jern, RA Russell, VK Pathak, JM Coffin PLoS pathogens 5 (4), e1000367, 2009 | 170 | 2009 |
Automated recognition of retroviral sequences in genomic data—RetroTector© GO Sperber, T Airola, P Jern, J Blomberg Nucleic acids research 35 (15), 4964-4976, 2007 | 168 | 2007 |
Pan-vertebrate comparative genomics unmasks retrovirus macroevolution A Hayward, CK Cornwallis, P Jern Proceedings of the National Academy of Sciences 112 (2), 464-469, 2015 | 161 | 2015 |
Role of APOBEC3 in genetic diversity among endogenous murine leukemia viruses P Jern, JP Stoye, JM Coffin PLoS genetics 3 (10), e183, 2007 | 150 | 2007 |
TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells L Fasching, A Kapopoulou, R Sachdeva, R Petri, ME Jönsson, C Männe, ... Cell reports 10 (1), 20-28, 2015 | 149 | 2015 |
Broad-scale phylogenomics provides insights into retrovirus–host evolution A Hayward, M Grabherr, P Jern Proceedings of the National Academy of Sciences 110 (50), 20146-20151, 2013 | 112 | 2013 |
TRIM28 controls a gene regulatory network based on endogenous retroviruses in human neural progenitor cells PL Brattås, ME Jönsson, L Fasching, JN Wahlestedt, M Shahsavani, ... Cell reports 18 (1), 1-11, 2017 | 102 | 2017 |
Unsupervised genome-wide recognition of local relationship patterns N Zamani, P Russell, H Lantz, MP Hoeppner, JRS Meadows, N Vijay, ... BMC genomics 14, 1-11, 2013 | 73 | 2013 |
Definition and variation of human endogenous retrovirus H P Jern, GO Sperber, J Blomberg Virology 327 (1), 93-110, 2004 | 70 | 2004 |
Sequence variability, gene structure, and expression of full-length human endogenous retrovirus H P Jern, GO Sperber, G Ahlsén, J Blomberg Journal of virology 79 (10), 6325-6337, 2005 | 68 | 2005 |
ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions A Hayward, A Ghazal, G Andersson, L Andersson, P Jern PloS one 8 (3), e59940, 2013 | 66 | 2013 |
The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities V Peona, OM Palacios-Gimenez, J Blommaert, J Liu, T Haryoko, ... Philosophical Transactions of the Royal Society B 376 (1833), 20200186, 2021 | 62 | 2021 |
Evolutionary conservation of orthoretroviral long terminal repeats (LTRs) and ab initio detection of single LTRs in genomic data F Benachenhou, P Jern, M Oja, G Sperber, V Blikstad, P Somervuo, ... PloS one 4 (4), e5179, 2009 | 55 | 2009 |
Development of broadly targeted human endogenous gammaretroviral pol-based real time PCRs: quantitation of RNA expression in human tissues A Forsman, Z Yun, L Hu, D Uzhameckis, P Jern, J Blomberg Journal of virological methods 129 (1), 16-30, 2005 | 45 | 2005 |