| CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing M Suvakov, A Panda, C Diesh, I Holmes, A Abyzov Gigascience 10 (11), giab074, 2021 | 59 | 2021 |
| A noncoding single-nucleotide polymorphism at 8q24 drives IDH1-mutant glioma formation C Yanchus, KL Drucker, TM Kollmeyer, R Tsai, W Winick-Ng, M Liang, ... Science 378 (6615), 68-78, 2022 | 38 | 2022 |
| Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability T Bae, L Fasching, Y Wang, JH Shin, M Suvakov, Y Jang, S Norton, ... Science 377 (6605), 511-517, 2022 | 38 | 2022 |
| Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora RR Vetukuri, S Tripathy, M Malar C, A Panda, SK Kushwaha, A Chawade, ... Genome biology and evolution 10 (9), 2432-2442, 2018 | 24 | 2018 |
| Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis A Jourdon, F Wu, J Mariani, D Capauto, S Norton, L Tomasini, A Amiri, ... Nature neuroscience 26 (9), 1505-1515, 2023 | 23 | 2023 |
| Haplotype-Phased Genome Assembly of Virulent Phytophthora ramorum Isolate ND886 Facilitated by Long-Read Sequencing Reveals Effector Polymorphisms … M Malar C, JD Yuzon, S Das, A Das, A Panda, S Ghosh, BM Tyler, ... Molecular Plant-Microbe Interactions 32 (8), 1047-1060, 2019 | 18 | 2019 |
| EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes A Panda, D Sen, A Ghosh, A Gupta, G Prakash Mishra, D Singh, W Ye, ... Molecular plant pathology 19 (1), 227-237, 2018 | 18 | 2018 |
| Updated Assembly of Phytophthora ramorum pr102 Isolate Incorporating Long Reads from PacBio Sequencing M Malar C, JD Yuzon, A Panda, T Kasuga, S Tripathy Molecular Plant-Microbe Interactions 32 (11), 1472-1474, 2019 | 13 | 2019 |
| Tricking Arthrinium malaysianum into Producing Industrially Important Enzymes Under 2-Deoxy D-Glucose Treatment S Mukherjee, MM Chandrababunaidu, A Panda, S Khowala, S Tripathy Frontiers in Microbiology 7, 596, 2016 | 10 | 2016 |
| Draft Genome Sequence of Cyanobacterium Hassallia byssoidea Strain VB512170, Isolated from Monuments in India D Singh, MM Chandrababunaidu, A Panda, D Sen, S Bhattacharyya, ... Genome Announcements 3 (2), 10.1128/genomea. 00064-15, 2015 | 10 | 2015 |
| Clonally selected lines after CRISPR-Cas editing are not isogenic A Panda, M Suvakov, J Mariani, KL Drucker, Y Park, Y Jang, ... The CRISPR Journal 6 (2), 176-182, 2023 | 7 | 2023 |
| ASD modelling in organoids reveals imbalance of excitatory cortical neuron subtypes during early neurogenesis A Jourdon, F Wu, J Mariani, D Capauto, S Norton, L Tomasini, A Amiri, ... bioRxiv, 2022.03. 19.484988, 2022 | 7 | 2022 |
| Comparative Genome Analysis Across 128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution and Localized Evolution of … K Mandal, S Dutta, A Upadhyay, A Panda, S Tripathy Frontiers in Microbiology 13, 806398, 2022 | 7 | 2022 |
| Deciphering the genome sequences of the hydrophobic cyanobacterium Scytonema tolypothrichoides VB-61278 A Das, A Panda, D Singh, MM Chandrababunaidu, GP Mishra, S Bhan, ... Genome announcements 3 (2), 10.1128/genomea. 00228-15, 2015 | 6 | 2015 |
| Genome annotator light (GAL): a Docker-based package for genome analysis and visualization A Panda, NM Chaudhari, S Tripathy Genomics 112 (1), 127-134, 2020 | 5 | 2020 |
| Draft genome sequence of exopolysaccharide-producing cyanobacterium Aphanocapsa montana BDHKU 210001 S Bhattacharyya, MM Chandrababunaidu, D Sen, A Panda, A Ghorai, ... Genome announcements 3 (2), 10.1128/genomea. 00057-15, 2015 | 5 | 2015 |
| SCELLECTOR: ranking amplification bias in single cells using shallow sequencing V Sarangi, A Jourdon, T Bae, A Panda, F Vaccarino, A Abyzov BMC bioinformatics 21, 1-10, 2020 | 4 | 2020 |
| Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad A Panda, NM Chaudhari, M Mukherjee, S Ghosh, AN Sarangi, CM Malar, ... Data in brief 25, 2019 | 2 | 2019 |
| Author Correction: Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis (Nature Neuroscience … A Jourdon, F Wu, J Mariani, D Capauto, S Norton, L Tomasini, A Amiri, ... Nature Neuroscience 26 (11), 2035, 2023 | 1 | 2023 |
| Genome-wide analysis and visualization of copy number with CNVpytor in igv. js A Panda, M Suvakov, H Thorvaldsdottir, JP Mesirov, JT Robinson, ... Bioinformatics 40 (8), btae453, 2024 | | 2024 |