Articles with public access mandates - Alberto Santos-ZavaletaLearn more
Not available anywhere: 2
The proteome landscape of the kingdoms of life
JB Müller, PE Geyer, AR Colaco, PV Treit, MT Strauss, M Oroshi, S Doll, ...
Nature 582 (7813), 592-596, 2020
Mandates: German Research Foundation, European Commission
VEGFR‐2 expression in malignant tumours of the canine mammary gland: a prospective survival study
A Santos, C Lopes, F Gärtner, AJF Matos
Veterinary and comparative oncology 14 (3), e83-e92, 2016
Mandates: Fundação para a Ciência e a Tecnologia, Portugal
Available somewhere: 53
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
Mandates: US National Institutes of Health, European Molecular Biology Laboratory
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
D Szklarczyk, A Santos, C Von Mering, LJ Jensen, P Bork, M Kuhn
Nucleic acids research 44 (D1), D380-D384, 2016
Mandates: European Molecular Biology Laboratory
EcoCyc: fusing model organism databases with systems biology
IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ...
Nucleic acids research 41 (D1), D605-D612, 2013
Mandates: US National Institutes of Health
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ...
Nucleic acids research 45 (D1), D543-D550, 2017
Mandates: US National Institutes of Health
EcoCyc: a comprehensive database of Escherichia coli biology
IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ...
Nucleic acids research 39 (suppl_1), D583-D590, 2010
Mandates: US National Institutes of Health
IntOGen-mutations identifies cancer drivers across tumor types
A Gonzalez-Perez, C Perez-Llamas, J Deu-Pons, D Tamborero, ...
Nature methods 10 (11), 1081-1082, 2013
Mandates: US National Institutes of Health, Government of Spain
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ...
Nucleic acids research 44 (D1), D133-D143, 2016
Mandates: US National Institutes of Health
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ...
Nucleic acids research 41 (D1), D203-D213, 2013
Mandates: US National Institutes of Health
EcoCyc: A comprehensive view of Escherichia coli biology
IM Keseler, C Bonavides-Martínez, J Collado-Vides, S Gama-Castro, ...
Nucleic acids research 37 (suppl_1), D464-D470, 2009
Mandates: US National Institutes of Health
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic acids research 39 (suppl_1), D98-D105, 2010
Mandates: US National Institutes of Health
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12
A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ...
Nucleic acids research 47 (D1), D212-D220, 2019
Mandates: US National Institutes of Health
Deep Visual Proteomics defines single-cell identity and heterogeneity
A Mund, F Coscia, A Kriston, R Hollandi, F Kovács, AD Brunner, E Migh, ...
Nature Biotechnology 40 (8), 1231-1240, 2022
Mandates: US National Institutes of Health, Hungarian Scientific Research Fund …
Plasma proteome profiling discovers novel proteins associated with non‐alcoholic fatty liver disease
L Niu, PE Geyer, NJ Wewer Albrechtsen, LL Gluud, A Santos, S Doll, ...
Molecular systems biology 15 (3), e8793, 2019
Mandates: German Research Foundation, European Commission
The ocean sampling day consortium
A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov, K Lehmann, ...
Gigascience 4, 1-5, 2015
Mandates: US Department of Energy, UK Natural Environment Research Council
TISSUES 2.0: an integrative web resource on mammalian tissue expression
O Palasca, A Santos, C Stolte, J Gorodkin, LJ Jensen
Database 2018, bay003, 2018
Mandates: Danish Council for Independent Research, Innovation Fund Denmark
The ecocyc database
PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ...
EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018
Mandates: US National Institutes of Health
The EcoCyc database in 2021
IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ...
Frontiers in microbiology 12, 711077, 2021
Mandates: US National Institutes of Health
A knowledge graph to interpret clinical proteomics data
A Santos, AR Colaço, AB Nielsen, L Niu, M Strauss, PE Geyer, F Coscia, ...
Nature biotechnology 40 (5), 692-702, 2022
Mandates: European Commission
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