| Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile CG Buffie, V Bucci, RR Stein, PT McKenney, L Ling, A Gobourne, D No, ... Nature 517 (7533), 205-208, 2015 | 1909 | 2015 |
| Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018 | 760 | 2018 |
| Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota RR Stein, V Bucci, NC Toussaint, CG Buffie, G Rätsch, EG Pamer, ... PLoS computational biology 9 (12), e1003388, 2013 | 655 | 2013 |
| Intestinal microbiota containing Barnesiella species cures vancomycin-resistant Enterococcus faecium colonization C Ubeda, V Bucci, S Caballero, A Djukovic, NC Toussaint, M Equinda, ... Infection and immunity 81 (3), 965-973, 2013 | 520 | 2013 |
| Proton pump inhibitors alter specific taxa in the human gastrointestinal microbiome: a crossover trial DE Freedberg, NC Toussaint, SP Chen, AJ Ratner, S Whittier, TC Wang, ... Gastroenterology 149 (4), 883-885. e9, 2015 | 339 | 2015 |
| Characterization of a novel orthomyxo-like virus causing mass die-offs of tilapia E Bacharach, N Mishra, T Briese, MC Zody, JE Kembou Tsofack, ... MBio 7 (2), 10.1128/mbio. 00431-16, 2016 | 241 | 2016 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 237 | 2021 |
| Loss of Microbiota-Mediated Colonization Resistance to Clostridium difficile Infection With Oral Vancomycin Compared With Metronidazole BB Lewis, CG Buffie, RA Carter, I Leiner, NC Toussaint, LC Miller, ... The Journal of infectious diseases 212 (10), 1656-1665, 2015 | 226 | 2015 |
| Gut microbial community structure and complications after kidney transplantation: a pilot study JR Lee, T Muthukumar, D Dadhania, NC Toussaint, L Ling, E Pamer, ... Transplantation 98 (7), 697-705, 2014 | 196 | 2014 |
| HLA-DR15 molecules jointly shape an autoreactive T cell repertoire in multiple sclerosis J Wang, I Jelcic, L Mühlenbruch, V Haunerdinger, NC Toussaint, Y Zhao, ... Cell 183 (5), 1264-1281. e20, 2020 | 181 | 2020 |
| Gut microbiota and tacrolimus dosing in kidney transplantation JR Lee, T Muthukumar, D Dadhania, Y Taur, RR Jenq, NC Toussaint, ... PloS one 10 (3), e0122399, 2015 | 179 | 2015 |
| Combined mutation in Vhl, Trp53 and Rb1 causes clear cell renal cell carcinoma in mice S Harlander, D Schönenberger, NC Toussaint, M Prummer, A Catalano, ... Nature medicine 23 (7), 869-877, 2017 | 141 | 2017 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer Cell 39 (3), 288-293, 2021 | 104 | 2021 |
| BALL-biochemical algorithms library 1.3 A Hildebrandt, AK Dehof, A Rurainski, A Bertsch, M Schumann, ... BMC bioinformatics 11, 1-5, 2010 | 98 | 2010 |
| Bioinformatics for precision oncology J Singer, A Irmisch, HJ Ruscheweyh, F Singer, NC Toussaint, ... Briefings in bioinformatics 20 (3), 778-788, 2019 | 71 | 2019 |
| Genomic and Geographic Context for the Evolution of High-Risk Carbapenem-Resistant Enterobacter cloacae Complex Clones ST171 and ST78 A Gomez-Simmonds, MK Annavajhala, Z Wang, N Macesic, Y Hu, ... MBio 9 (3), 10.1128/mbio. 00542-18, 2018 | 68 | 2018 |
| Genomic surveillance reveals diversity of multidrug-resistant organism colonization and infection: a prospective cohort study in liver transplant recipients N Macesic, A Gomez-Simmonds, SB Sullivan, MJ Giddins, SA Ferguson, ... Clinical Infectious Diseases 67 (6), 905-912, 2018 | 67 | 2018 |
| Inferring latent task structure for multitask learning by multiple kernel learning C Widmer, NC Toussaint, Y Altun, G Rätsch BMC bioinformatics 11, 1-8, 2010 | 67 | 2010 |
| Barrett's esophagus is associated with a distinct oral microbiome EJ Snider, G Compres, DE Freedberg, MJ Giddins, H Khiabanian, ... Clinical and translational gastroenterology 9 (3), e135, 2018 | 56 | 2018 |
| A mathematical framework for the selection of an optimal set of peptides for epitope-based vaccines NC Toussaint, P Dönnes, O Kohlbacher PLoS computational biology 4 (12), e1000246, 2008 | 56 | 2008 |
Eric PamerDuchossois Family Institute, University of ChicagoVerified email at uchicago.edu