Articles with public access mandates - John SidneyLearn more
Not available anywhere: 5
Review
Counter-regulation of regulatory T cells by autoreactive CD8+ T cells in rheumatoid arthritis
I Cammarata, C Martire, A Citro, D Raimondo, D Fruci, O Melaiu, V D'Oria, ...
Journal of Autoimmunity 99, 81-97, 2019
Mandates: Cancer Research UK, Government of Italy
Review
A promiscuous T cell epitope-based HIV vaccine providing redundant population coverage of the HLA class II elicits broad, polyfunctional T cell responses in nonhuman primates
SP Ribeiro, VGDM Mattaraia, RR Almeida, EJG Valentine, NS Sales, ...
Vaccine 40 (2), 239-246, 2022
Mandates: Fundação de Amparo à Pesquisa do Estado de São Paulo
Review
CD4.
NG Muller, R Alencar, L Jamal, J Hammer, J Sidney, A Sette, ...
Clinical & Experimental Immunology 164 (1), 2011
Mandates: US National Institutes of Health
Review
An automatic computational pipeline to display MHC binding motifs
P Wang, B Peters, J Sidney, A Sette
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
Mandates: US National Institutes of Health
Review
Immunomic and Bioinformatics Analysis of Host Immunity in the Vaccinia Virus and Influenza A Systems
M Moutaftsi, B Peters, V Pasquetto, C Oseroff, J Sidney, H Hoa-Bui, ...
National Institute of Allergy and Infectious Diseases, NIH: Frontiers in …, 2008
Mandates: US National Institutes of Health
Available somewhere: 246
Review
Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans
J Mateus, A Grifoni, A Tarke, J Sidney, SI Ramirez, JM Dan, ZC Burger, ...
Science 370 (6512), 89-94, 2020
Mandates: US National Institutes of Health
Review
A sequence homology and bioinformatic approach can predict candidate targets for immune responses to SARS-CoV-2
A Grifoni, J Sidney, Y Zhang, RH Scheuermann, B Peters, A Sette
Cell host & microbe 27 (4), 671-680. e2, 2020
Mandates: US National Institutes of Health
Review
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
P Wang, J Sidney, C Dow, B Mothé, A Sette, B Peters
PLoS computational biology 4 (4), e1000048, 2008
Mandates: US National Institutes of Health
Review
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61, 1-13, 2009
Mandates: US National Institutes of Health
Review
HLA class I supertypes: a revised and updated classification
J Sidney, B Peters, N Frahm, C Brander, A Sette
BMC immunology 9, 1-15, 2008
Mandates: US National Institutes of Health
Review
T cells from patients with Parkinson’s disease recognize α-synuclein peptides
D Sulzer, RN Alcalay, F Garretti, L Cote, E Kanter, J Agin-Liebes, C Liong, ...
Nature 546 (7660), 656-661, 2017
Mandates: US National Institutes of Health
Review
SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron
A Tarke, CH Coelho, Z Zhang, JM Dan, ED Yu, N Methot, NI Bloom, ...
Cell 185 (5), 847-859. e11, 2022
Mandates: US National Institutes of Health
Review
Peptide binding predictions for HLA DR, DP and DQ molecules
P Wang, J Sidney, Y Kim, A Sette, O Lund, M Nielsen, B Peters
BMC bioinformatics 11, 1-12, 2010
Mandates: US National Institutes of Health
Review
Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells
D Weiskopf, MA Angelo, EL de Azeredo, J Sidney, JA Greenbaum, ...
Proceedings of the National Academy of Sciences 110 (22), E2046-E2053, 2013
Mandates: US National Institutes of Health
Review
Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction
JG Abelin, DB Keskin, S Sarkizova, CR Hartigan, W Zhang, J Sidney, ...
Immunity 46 (2), 315-326, 2017
Mandates: US National Institutes of Health
Review
Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals
A Tarke, J Sidney, N Methot, ED Yu, Y Zhang, JM Dan, B Goodwin, ...
Cell Reports Medicine 2 (7), 2021
Mandates: US National Institutes of Health
Review
Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases
A Tarke, J Sidney, CK Kidd, JM Dan, SI Ramirez, ED Yu, J Mateus, ...
Cell Reports Medicine 2 (2), 2021
Mandates: US National Institutes of Health
Review
Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire
DA Ostrov, BJ Grant, YA Pompeu, J Sidney, M Harndahl, S Southwood, ...
Proceedings of the National Academy of Sciences 109 (25), 9959-9964, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Review
A large fraction of HLA class I ligands are proteasome-generated spliced peptides
J Liepe, F Marino, J Sidney, A Jeko, DE Bunting, A Sette, PM Kloetzel, ...
Science 354 (6310), 354-358, 2016
Mandates: US National Institutes of Health, Netherlands Organisation for Scientific …
Review
Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia
M Rajasagi, SA Shukla, EF Fritsch, DB Keskin, D DeLuca, E Carmona, ...
Blood, The Journal of the American Society of Hematology 124 (3), 453-462, 2014
Mandates: US National Institutes of Health
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