Articles with public access mandates - Erik AurellLearn more
Available somewhere: 49
Quasi-potential landscape in complex multi-stable systems
JX Zhou, MDS Aliyu, E Aurell, S Huang
Journal of the Royal Society Interface 9 (77), 3539-3553, 2012
Mandates: Canadian Institutes of Health Research
Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
M Ekeberg, T Hartonen, E Aurell
Journal of Computational Physics 276, 341-356, 2014
Mandates: Academy of Finland
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
MJ Skwark, NJ Croucher, S Puranen, C Chewapreecha, M Pesonen, ...
PLoS genetics 13 (2), e1006508, 2017
Mandates: Chinese Academy of Sciences, Academy of Finland, UK Medical Research Council …
Improving contact prediction along three dimensions
C Feinauer, MJ Skwark, A Pagnani, E Aurell
PLoS computational biology 10 (10), e1003847, 2014
Mandates: Academy of Finland
Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes
HL Zeng, V Dichio, E Rodríguez Horta, K Thorell, E Aurell
Proceedings of the National Academy of Sciences 117 (49), 31519-31526, 2020
Mandates: National Natural Science Foundation of China, European Commission
Whole-genome mapping of 5′ RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis
N Innocenti, M Golumbeanu, AF d'Hérouël, C Lacoux, RA Bonnin, ...
Rna 21 (5), 1018-1030, 2015
Mandates: US National Institutes of Health, Academy of Finland, Swedish Research Council
Dynamic message-passing approach for kinetic spin models with reversible dynamics
G Del Ferraro, E Aurell
Physical Review E 92 (1), 010102, 2015
Mandates: Academy of Finland, Swedish Research Council
On the von Neumann entropy of a bath linearly coupled to a driven quantum system
E Aurell, R Eichhorn
New Journal of Physics 17 (6), 065007, 2015
Mandates: Academy of Finland, Swedish Research Council
Landscape of RNA polyadenylation in E. coli
A Maes, C Gracia, N Innocenti, K Zhang, E Aurell, E Hajnsdorf
Nucleic Acids Research 45 (5), 2746-2756, 2017
Mandates: Academy of Finland, Swedish Research Council
The maximum entropy fallacy redux?
E Aurell
PLoS computational biology 12 (5), e1004777, 2016
Mandates: Academy of Finland, Swedish Research Council
DCA for genome-wide epistasis analysis: the statistical genetics perspective
CY Gao, F Cecconi, A Vulpiani, HJ Zhou, E Aurell
Physical biology 16 (2), 026002, 2019
Mandates: National Natural Science Foundation of China
Unified picture of strong-coupling stochastic thermodynamics and time reversals
E Aurell
Physical Review E 97 (4), 042112, 2018
Mandates: Academy of Finland
On work and heat in time-dependent strong coupling
E Aurell
Entropy 19 (11), 595, 2017
Mandates: Chinese Academy of Sciences, Academy of Finland
Entropy production of a Brownian ellipsoid in the overdamped limit
R Marino, R Eichhorn, E Aurell
Physical Review E 93 (1), 012132, 2016
Mandates: Swedish Research Council
Do Gedanken experiments compel quantization of gravity?
E Rydving, E Aurell, I Pikovski
Physical Review D 104 (8), 086024, 2021
Mandates: Swedish Research Council, European Commission
Symmetries of quantum evolutions
G Chiribella, E Aurell, K Życzkowski
Physical Review Research 3 (3), 033028, 2021
Mandates: National Natural Science Foundation of China, Swedish Research Council …
Time reversals of irreversible quantum maps
E Aurell, J Zakrzewski, K Życzkowski
Journal of Physics A: Mathematical and Theoretical 48 (38), 38FT01, 2015
Mandates: Academy of Finland, Swedish Research Council
SEK: sparsity exploiting k-mer-based estimation of bacterial community composition
S Chatterjee, D Koslicki, S Dong, N Innocenti, L Cheng, Y Lan, ...
Bioinformatics 30 (17), 2423-2431, 2014
Mandates: Swedish Research Council, European Commission
Characteristic functions of quantum heat with baths at different temperatures
E Aurell
Physical Review E 97 (6), 062117, 2018
Mandates: Chinese Academy of Sciences, Academy of Finland
Diffusion of a Brownian ellipsoid in a force field
E Aurell, S Bo, M Dias, R Eichhorn, R Marino
Europhysics letters 114 (3), 30005, 2016
Mandates: Swedish Research Council
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