CRISPR–Cas12-based detection of SARS-CoV-2 JP Broughton, X Deng, G Yu, CL Fasching, V Servellita, J Singh, X Miao, ... Nature biotechnology 38 (7), 870-874, 2020 | 2532 | 2020 |
Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant X Deng, MA Garcia-Knight, MM Khalid, V Servellita, C Wang, MK Morris, ... Cell 184 (13), 3426-3437. e8, 2021 | 718* | 2021 |
Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids W Gu, X Deng, ML al. Nature Medicine, 2020 | 452 | 2020 |
Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 302 | 2020 |
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ... Science 369 (6503), 582-587, 2020 | 302* | 2020 |
Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ... Cell 184 (10), 2587-2594. e7, 2021 | 278 | 2021 |
Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance X Deng, A Achari, S Federman, G Yu, S Somasekar, I Bártolo, S Yagi, ... Nature microbiology 5 (3), 443-454, 2020 | 146 | 2020 |
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19 SJ Shah, PN Barish, PA Prasad, A Kistler, N Neff, J Kamm, LM Li, CY Chiu, ... EClinicalMedicine 27, 2020 | 86 | 2020 |
Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar M Desilets, X Deng, C Rao, AW Ensminger, DO Krause, PM Sherman, ... Inflammatory bowel diseases 22 (1), 1-12, 2016 | 63 | 2016 |
Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California V Servellita, MK Morris, A Sotomayor-Gonzalez, AS Gliwa, E Torres, ... Nature microbiology 7 (2), 277-288, 2022 | 53 | 2022 |
Outbreak of Invasive Streptococcus pneumoniae Serotype 12F Among a Marginalized Inner-City Population in Winnipeg, Canada, 2009–2011 E Schillberg, M Isaac, X Deng, G Peirano, JL Wylie, P Van Caeseele, ... Clinical infectious diseases 59 (5), 651-657, 2014 | 47 | 2014 |
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections PH Serpa, X Deng, M Abdelghany, E Crawford, K Malcolm, S Caldera, ... Genome medicine 14 (1), 74, 2022 | 43 | 2022 |
Streptococcus pneumoniae infection: a Canadian perspective X Deng, D Church, OG Vanderkooi, DE Low, DR Pillai Expert review of anti-infective therapy 11 (8), 781-791, 2013 | 42 | 2013 |
Whole-Genome Sequencing Reveals the Origin and Rapid Evolution of an Emerging Outbreak Strain of Streptococcus pneumoniae 12F X Deng, G Peirano, E Schillberg, T Mazzulli, SD Gray-Owen, JL Wylie, ... Clinical Infectious Diseases 62 (9), 1126-1132, 2016 | 34 | 2016 |
Fatal case of chronic Jamestown Canyon virus encephalitis diagnosed by metagenomic sequencing in patient receiving rituximab IH Solomon, VS Ganesh, G Yu, XD Deng, MR Wilson, S Miller, TA Milligan, ... Emerging Infectious Diseases 27 (1), 238, 2021 | 22 | 2021 |
Genetic analysis of invasive pneumococcal isolates from children in Ontario, Canada, 2007–2012 X Deng, G Arya, N Memari, R Mackenzie, G MacMullin, DE Low, DR Pillai, ... The Pediatric infectious disease journal 34 (6), 594-598, 2015 | 21 | 2015 |
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020 K Ellora, B Irin, A Pauli, DB Amie, D Xianding, KM Patrick, LR Beth, ... Infect Control Hosp Epidemiol, 2020 | 19* | 2020 |
Population structure and drug resistance patterns of emerging non-PCV-13 Streptococcus pneumoniae serotypes 22F, 15A, and 8 isolated from adults in Ontario, Canada VR Duvvuri, X Deng, S Teatero, N Memari, T Athey, N Fittipaldi, ... Infection, Genetics and Evolution 42, 1-8, 2016 | 19 | 2016 |
Whole-genome sequencing for surveillance of invasive pneumococcal diseases in Ontario, Canada: rapid prediction of genotype, antibiotic resistance and characterization of … X Deng, N Memari, S Teatero, T Athey, M Isabel, T Mazzulli, N Fittipaldi, ... Frontiers in microbiology 7, 2099, 2016 | 13 | 2016 |
New genomes from the Congo Basin expand history of CRF01_AE origin and dissemination DM Junqueira, E Wilkinson, A Vallari, X Deng, A Achari, G Yu, C McArthur, ... AIDS Research and Human Retroviruses 36 (7), 574-582, 2020 | 8 | 2020 |