Articles with public access mandates - Zhaofeng YELearn more
Available somewhere: 11
Predicting protein targets for drug-like compounds using transcriptomics
NA Pabon, Y Xia, SK Estabrooks, Z Ye, AK Herbrand, E Süß, RM Biondi, ...
PLoS computational biology 14 (12), e1006651, 2018
Mandates: US National Science Foundation, US National Institutes of Health
A specific inhibitor of ALDH1A3 regulates retinoic acid biosynthesis in glioma stem cells
J Li, S Garavaglia, Z Ye, A Moretti, OV Belyaeva, A Beiser, M Ibrahim, ...
Communications Biology 4 (1), 1420, 2021
Mandates: US National Institutes of Health
Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge
Z Ye, MP Baumgartner, BM Wingert, CJ Camacho
Journal of computer-aided molecular design 30, 695-706, 2016
Mandates: US National Institutes of Health
Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase
Z Ye, PG Needham, SK Estabrooks, SK Whitaker, BL Garcia, S Misra, ...
Scientific reports 7 (1), 1789, 2017
Mandates: US National Institutes of Health
Defining the Kv2. 1–syntaxin molecular interaction identifies a first-in-class small molecule neuroprotectant
CY Yeh, Z Ye, A Moutal, S Gaur, AM Henton, S Kouvaros, JL Saloman, ...
Proceedings of the National Academy of Sciences 116 (31), 15696-15705, 2019
Mandates: US National Institutes of Health
MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection
Z Wang, Y Zhong, Z Ye, L Zeng, Y Chen, M Shi, Z Yuan, Q Zhou, M Qian, ...
Nucleic Acids Research 50 (1), 46-56, 2022
Mandates: National Natural Science Foundation of China
SPLDExtraTrees: robust machine learning approach for predicting kinase inhibitor resistance
ZY Yang, ZF Ye, YJ Xiao, CY Hsieh, SY Zhang
Briefings in Bioinformatics 23 (3), bbac050, 2022
Mandates: National Research Foundation, Singapore
MetalProGNet: a structure-based deep graph model for metalloprotein–ligand interaction predictions
D Jiang, Z Ye, CY Hsieh, Z Yang, X Zhang, Y Kang, H Du, Z Wu, J Wang, ...
Chemical Science 14 (8), 2054-2069, 2023
Mandates: National Natural Science Foundation of China
ScaffComb: A Phenotype‐Based Framework for Drug Combination Virtual Screening in Large‐Scale Chemical Datasets
Z Ye, F Chen, J Zeng, J Gao, MQ Zhang
Advanced Science 8 (24), 2102092, 2021
Mandates: Chinese Academy of Sciences, National Natural Science Foundation of China
Development of a 32-gene signature using machine learning for accurate prediction of inflammatory bowel disease
S Yu, M Zhang, Z Ye, Y Wang, X Wang, YG Chen
Cell Regeneration 12 (1), 8, 2023
Mandates: National Natural Science Foundation of China
Proteome-scale detection of drug-target interactions using correlations in transcriptomic perturbations
NA Pabon, Y Xia, SK Estabrooks, Z Ye, AK Herbrand, E Süß, RM Biondi, ...
bioRxiv, 254367, 2018
Mandates: US National Science Foundation, US National Institutes of Health
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