High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay L Dölken, Z Ruzsics, B Rädle, CC Friedel, R Zimmer, J Mages, ... Rna 14 (9), 1959-1972, 2008 | 490 | 2008 |
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast C Miller, B Schwalb, K Maier, D Schulz, S Dümcke, B Zacher, A Mayer, ... Molecular systems biology 7 (1), 458, 2011 | 476 | 2011 |
The SARS-CoV-2 RNA–protein interactome in infected human cells N Schmidt, CA Lareau, H Keshishian, S Ganskih, C Schneider, T Hennig, ... Nature microbiology 6 (3), 339-353, 2021 | 293 | 2021 |
CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response J Bancerek, ZC Poss, I Steinparzer, V Sedlyarov, T Pfaffenwimmer, ... Immunity 38 (2), 250-262, 2013 | 287 | 2013 |
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life CC Friedel, L Dölken, Z Ruzsics, UH Koszinowski, R Zimmer Nucleic acids research 37 (17), e115-e115, 2009 | 273 | 2009 |
Widespread disruption of host transcription termination in HSV-1 infection AJ Rutkowski, F Erhard, A L’Hernault, T Bonfert, M Schilhabel, C Crump, ... Nature communications 6 (1), 7126, 2015 | 268 | 2015 |
Systematic analysis of viral and cellular microRNA targets in cells latently infected with human γ-herpesviruses by RISC immunoprecipitation assay L Dölken, G Malterer, F Erhard, S Kothe, CC Friedel, G Suffert, ... Cell host & microbe 7 (4), 324-334, 2010 | 255 | 2010 |
Degradation of Cellular miR-27 by a Novel, Highly Abundant Viral Transcript Is Important for Efficient Virus Replication In Vivo L Marcinowski, M Tanguy, A Krmpotic, B Rädle, VJ Lisnić, L Tuddenham, ... PLoS pathogens 8 (2), e1002510, 2012 | 221 | 2012 |
scSLAM-seq reveals core features of transcription dynamics in single cells F Erhard, MAP Baptista, T Krammer, T Hennig, M Lange, P Arampatzi, ... Nature 571 (7765), 419-423, 2019 | 193 | 2019 |
The phosphoproteome of toll‐like receptor‐activated macrophages G Weintz, JV Olsen, K Frühauf, M Niedzielska, I Amit, J Jantsch, J Mages, ... Molecular systems biology 6 (1), 371, 2010 | 183 | 2010 |
Improved Ribo-seq enables identification of cryptic translation events F Erhard, A Halenius, C Zimmermann, A L'Hernault, DJ Kowalewski, ... Nature methods 15 (5), 363-366, 2018 | 181 | 2018 |
Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection AH Buck, J Perot, MA Chisholm, DS Kumar, LEE Tuddenham, V Cognat, ... Rna 16 (2), 307-315, 2010 | 177 | 2010 |
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution L Windhager, T Bonfert, K Burger, Z Ruzsics, S Krebs, S Kaufmann, ... Genome research 22 (10), 2031-2042, 2012 | 166 | 2012 |
4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response K Burger, B Mühl, M Kellner, M Rohrmoser, A Gruber-Eber, L Windhager, ... RNA biology 10 (10), 1623-1630, 2013 | 160 | 2013 |
Widespread context dependency of microRNA-mediated regulation F Erhard, J Haas, D Lieber, G Malterer, L Jaskiewicz, M Zavolan, L Dölken, ... Genome research 24 (6), 906-919, 2014 | 141 | 2014 |
SARS-CoV-2 Infects Endothelial Cells In Vivo and In Vitro F Liu, K Han, R Blair, K Kenst, Z Qin, B Upcin, P Wörsdörfer, CC Midkiff, ... Frontiers in cellular and infection microbiology 11, 701278, 2021 | 139 | 2021 |
Prevalence and frequency of circulating t (14; 18)‐MBR translocation carrying cells in healthy individuals F Schüler, L Dölken, C Hirt, T Kiefer, T Berg, G Fusch, K Weitmann, ... International journal of cancer 124 (4), 958-963, 2009 | 136 | 2009 |
Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation L Dölken, J Perot, V Cognat, A Alioua, M John, J Soutschek, Z Ruzsics, ... Journal of virology 81 (24), 13771-13782, 2007 | 131 | 2007 |
Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture B Rädle, AJ Rutkowski, Z Ruzsics, CC Friedel, UH Koszinowski, L Dölken JoVE (Journal of Visualized Experiments), e50195, 2013 | 124 | 2013 |
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway Y Murakawa, M Hinz, J Mothes, A Schuetz, M Uhl, E Wyler, T Yasuda, ... Nature communications 6 (1), 7367, 2015 | 120 | 2015 |