α2, 3 and α2, 6 N-linked sialic acids facilitate efficient binding and transduction by adeno-associated virus types 1 and 6 Z Wu, E Miller, M Agbandje-McKenna, RJ Samulski Journal of virology 80 (18), 9093-9103, 2006 | 404 | 2006 |
Prediction of protein–ligand binding poses via a combination of induced fit docking and metadynamics simulations AJ Clark, P Tiwary, K Borrelli, S Feng, EB Miller, R Abel, RA Friesner, ... Journal of chemical theory and computation 12 (6), 2990-2998, 2016 | 230 | 2016 |
Capsid antibodies to different adeno-associated virus serotypes bind common regions BL Gurda, MA DiMattia, EB Miller, A Bennett, R McKenna, WS Weichert, ... Journal of virology 87 (16), 9111-9124, 2013 | 143 | 2013 |
Characterization of the adeno-associated virus 1 and 6 sialic acid binding site LY Huang, A Patel, R Ng, EB Miller, S Halder, R McKenna, A Asokan, ... Journal of virology 90 (11), 5219-5230, 2016 | 110 | 2016 |
Reliable and accurate solution to the induced fit docking problem for protein–ligand binding EB Miller, RB Murphy, D Sindhikara, KW Borrelli, MJ Grisewood, F Ranalli, ... Journal of Chemical Theory and Computation 17 (4), 2630-2639, 2021 | 91 | 2021 |
Production, purification and preliminary X-ray crystallographic studies of adeno-associated virus serotype 1 EB Miller, B Gurda-Whitaker, L Govindasamy, R McKenna, S Zolotukhin, ... Acta Crystallographica Section F: Structural Biology and Crystallization …, 2006 | 71 | 2006 |
Benchmarking refined and unrefined AlphaFold2 structures for hit discovery Y Zhang, M Vass, D Shi, E Abualrous, JM Chambers, N Chopra, C Higgs, ... Journal of Chemical Information and Modeling 63 (6), 1656-1667, 2023 | 59 | 2023 |
Computational methods for high resolution prediction and refinement of protein structures RA Friesner, R Abel, DA Goldfeld, EB Miller, CS Murrett Current opinion in structural biology 23 (2), 177-184, 2013 | 28 | 2013 |
Prediction of Long Loops with Embedded Secondary Structure using the Protein Local Optimization Program EB Miller, CS Murrett, K Zhu, S Zhao, DA Goldfeld, J Bylund, RA Friesner Journal of Chemical Theory and Computation 9 (3), 1846-1864, 2013 | 16 | 2013 |
Induced-fit docking enables accurate free energy perturbation calculations in homology models T Xu, K Zhu, A Beautrait, J Vendome, KW Borrelli, R Abel, RA Friesner, ... Journal of Chemical Theory and Computation 18 (9), 5710-5724, 2022 | 15 | 2022 |
On the Validity of the Born− Oppenheimer Separation and the Accuracy of Diagonal Corrections in Anharmonic Molecular Vibrations S Hirata, EB Miller, Y Ohnishi, K Yagi The Journal of Physical Chemistry A 113 (45), 12461-12469, 2009 | 11 | 2009 |
Reliable and Accurate Prediction of Single-Residue pKa Values through Free Energy Perturbation Calculations D Coskun, W Chen, AJ Clark, C Lu, ED Harder, L Wang, RA Friesner, ... Journal of Chemical Theory and Computation 18 (12), 7193-7204, 2022 | 10 | 2022 |
A Pt (IV)-conjugated brain penetrant macrocyclic peptide shows pre-clinical efficacy in glioblastoma JL Jimenez-Macias, YC Lee, E Miller, T Finkelberg, M Zdioruk, G Berger, ... Journal of Controlled Release 352, 623-636, 2022 | 9 | 2022 |
Using AlphaFold and experimental structures for the prediction of the structure and binding affinities of GPCR complexes via induced fit docking and free energy perturbation D Coskun, M Lihan, JP Rodrigues, M Vass, D Robinson, RA Friesner, ... Journal of Chemical Theory and Computation 20 (1), 477-489, 2023 | 8 | 2023 |
A welfare analysis of subsidies for airports BI Miller, JF Dewey, D Denslow Jr, EB Miller Journal of Air Transport Management 50, 83-90, 2016 | 7 | 2016 |
Enabling structure-based drug discovery utilizing predicted models EB Miller, H Hwang, M Shelley, A Placzek, JP Rodrigues, RK Suto, ... Cell 187 (3), 521-525, 2024 | 3 | 2024 |
Structure–Activity Relationship of a Pyrrole Based Series of PfPKG Inhibitors as Anti-Malarials JA Gilleran, K Ashraf, M Delvillar, T Eck, R Fondekar, EB Miller, ... Journal of medicinal chemistry 67 (5), 3467-3503, 2024 | 1 | 2024 |
Advancing Loop Prediction to Ultra-High Resolution Sampling EB Miller Columbia University, 2014 | 1 | 2014 |
Functionalization of Pt (IV)–Ammines Enables Site-Directed Covalent Modification of mRNA E Miller, CE Farquhar, J Rodriguez, A Loas, BL Pentelute | | 2024 |
In vivo Antibody Painting for Next Generation Weight Loss Drugs K Kitahara, A Rondon, E Miller, HH Mak, A Loas, BL Pentelute bioRxiv, 2024.08. 22.609257, 2024 | | 2024 |