Repetitive elements may comprise over two-thirds of the human genome APJ de Koning, W Gu, TA Castoe, MA Batzer, DD Pollock PLoS genetics 7 (12), e1002384, 2011 | 1322 | 2011 |
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ... Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013 | 524 | 2013 |
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage H Bradley Shaffer, P Minx, DE Warren, AM Shedlock, RC Thomson, ... Genome biology 14, 1-23, 2013 | 368 | 2013 |
Evidence for an ancient adaptive episode of convergent molecular evolution TA Castoe*, APJ de Koning*, HM Kim, W Gu, BP Noonan, G Naylor, ... Proceedings of the National Academy of Sciences 106 (22), 8986-8991, 2009 | 342 | 2009 |
Habitat Association in Two Genetic Groups of the Insect-Pathogenic Fungus Metarhizium anisopliae: Uncovering Cryptic Species? MJ Bidochka, AM Kamp, TM Lavender, J Dekoning, JNA De Croos Applied and Environmental Microbiology 67 (3), 1335-1342, 2001 | 331 | 2001 |
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013 | 325 | 2013 |
Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake TA Castoe, AW Poole, APJ De Koning, KL Jones, DF Tomback, ... PloS one 7 (2), e30953, 2012 | 307 | 2012 |
The interface of protein structure, protein biophysics, and molecular evolution DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ... Protein Science, 2012 | 237 | 2012 |
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence TA Castoe, AW Poole, W Gu, AP Jason de Koning, JM Daza, EN Smith, ... Molecular Ecology Resources 10 (2), 341-347, 2010 | 236 | 2010 |
Effects of Fis on Escherichia coli gene expression during different growth stages MD Bradley, MB Beach, APJ de Koning, TS Pratt, R Osuna Microbiology 153 (9), 2922-2940, 2007 | 202 | 2007 |
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes JA St John, EL Braun, SR Isberg, LG Miles, AY Chong, J Gongora, ... Genome biology 13, 1-12, 2012 | 163 | 2012 |
Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing TA Castoe, KT Hall, ML Guibotsy Mboulas, W Gu, APJ De Koning, SE Fox, ... Genome Biology and Evolution 3, 641-653, 2011 | 104 | 2011 |
Lifetime pharmacokinetic model for hydrophobic contaminants in marine mammals BE Hickie, D Mackay, J de Koning Environmental Toxicology and Chemistry: An International Journal 18 (11 …, 1999 | 97 | 1999 |
Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes TA Castoe, APJ de Koning, KT Hall, KD Yokoyama, W Gu, EN Smith, ... Genome Biology 12, 1-8, 2011 | 91 | 2011 |
Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome BW Perry, DC Card, JW McGlothlin, GIM Pasquesi, RH Adams, ... Genome Biology and Evolution 10 (8), 2110-2129, 2018 | 85 | 2018 |
Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference NM Krishnan, H Seligmann, CB Stewart, APJ De Koning, DD Pollock Molecular biology and evolution 21 (10), 1871-1883, 2004 | 80 | 2004 |
Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species TA Castoe, JW Streicher, JM Meik, MJ Ingrasci, AW Poole, AP Koning, ... Molecular Ecology Resources, 2012 | 39 | 2012 |
Rapid likelihood analysis on large phylogenies using partial sampling of substitution histories APJ de Koning, W Gu, DD Pollock Molecular biology and evolution 27 (2), 249-265, 2010 | 34 | 2010 |
Dynamic nucleotide mutation gradients and control region usage in squamate reptile mitochondrial genomes TA Castoe, W Gu, APJ De Koning, JM Daza, ZJ Jiang, CL Parkinson, ... Cytogenetic and Genome Research 127 (2-4), 112-127, 2010 | 31 | 2010 |
Are teleomorphs really necessary?: modelling the potential effects of Muller's Ratchet on deuteromycetous entomopathogenic fungi MJ Bidochka, J De Koning Mycological Research 105 (8), 1014-1019, 2001 | 23 | 2001 |