Articles with public access mandates - Ruiqing ZhengLearn more
Not available anywhere: 17
Effective identification of essential proteins based on priori knowledge, network topology and gene expressions
M Li, R Zheng, H Zhang, J Wang, Y Pan
Methods 67 (3), 325-333, 2014
Mandates: National Natural Science Foundation of China
Prioritizing disease genes by using search engine algorithm
M Li, R Zheng, Q Li, J Wang, FX Wu, Z Zhang
Current Bioinformatics 11 (2), 195-202, 2016
Mandates: National Natural Science Foundation of China
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction
J Xiang, J Zhang, R Zheng, X Li, M Li
Briefings in Bioinformatics 22 (5), bbab080, 2021
Mandates: National Natural Science Foundation of China
MGT-SM: a method for constructing cellular signal transduction networks
M Li, R Zheng, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
Mandates: National Natural Science Foundation of China
An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines
R Zheng, M Li, X Chen, S Zhao, FX Wu, Y Pan, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (1 …, 2019
Mandates: National Natural Science Foundation of China
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data
S Chen, X Yan, R Zheng, M Li
Briefings in Bioinformatics 24 (1), bbac580, 2023
Mandates: National Natural Science Foundation of China
Identifying interactions between kinases and substrates based on protein–protein interaction network
Q Chen, C Deng, W Lan, Z Liu, R Zheng, J Liu, J Wang
Journal of Computational Biology 26 (8), 836-845, 2019
Mandates: National Natural Science Foundation of China
NIMCE: a gene regulatory network inference approach based on multi time delays causal entropy
F Haonan, R Zheng, J Wang, F Wu, M Li
IEEE/ACM transactions on computational biology and bioinformatics, 2020
Mandates: National Natural Science Foundation of China
Using deep neural network to predict drug sensitivity of cancer cell lines
Y Wang, M Li, R Zheng, X Shi, Y Li, F Wu, J Wang
Intelligent Computing Theories and Application: 14th International …, 2018
Mandates: National Natural Science Foundation of China
DeepCI: a deep learning based clustering method for single cell RNA-seq data
Z Liang, R Zheng, S Chen, X Yan, M Li
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021
Mandates: National Natural Science Foundation of China
MKG: a mutual information based method to infer single cell gene regulatory network
Y Zeng, X Yan, Z Liang, R Zheng, M Li
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021
Mandates: National Natural Science Foundation of China
A deep matrix factorization based approach for single-cell RNA-seq data clustering
Z Liang, R Zheng, S Chen, X Yan, M Li
Methods 205, 114-122, 2022
Mandates: National Natural Science Foundation of China
A posterior probability based Bayesian method for single-cell RNA-seq data imputation
S Chen, R Zheng, L Tian, FX Wu, M Li
Methods, 2023
Mandates: National Natural Science Foundation of China
A single cell potency inference method based on the local cell-specific network entropy
Z Xu, R Zheng, Y Chen, E Wang, M Li
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
Mandates: National Natural Science Foundation of China
KSIBW: Predicting Kinase-Substrate Interactions Based on Bi-random Walk
C Deng, Q Chen, Z Liu, R Zheng, J Liu, J Wang, W Lan
International Symposium on Bioinformatics Research and Applications, 151-162, 2018
Mandates: National Natural Science Foundation of China
PBMarsNet: A multivariate adaptive regression splines based method to reconstruct gene regulatory networks
S Zhao, R Zheng, X Chen, Y Li, FX Wu, M Li
Bioinformatics Research and Applications: 14th International Symposium …, 2018
Mandates: National Natural Science Foundation of China
BayesImpute: a Bayesian imputation method for single-cell RNA-seq data
S Chen, R Zheng, L Tian, FX Wu, M Li
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
Mandates: National Natural Science Foundation of China
Available somewhere: 24
Complex brain network analysis and its applications to brain disorders: a survey
J Liu, M Li, Y Pan, W Lan, R Zheng, FX Wu, J Wang
Complexity 2017, 2017
Mandates: National Natural Science Foundation of China
SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation
R Zheng, M Li, Z Liang, FX Wu, Y Pan, J Wang
Bioinformatics 35 (19), 3642-3650, 2019
Mandates: National Natural Science Foundation of China
Network-based methods for predicting essential genes or proteins: a survey
X Li, W Li, M Zeng, R Zheng, M Li
Briefings in bioinformatics 21 (2), 566-583, 2020
Mandates: National Natural Science Foundation of China
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