Articles with public access mandates - Daniel BlankenbergLearn more
Not available anywhere: 1
172. Child Weight Gain Trajectories Associated With Oral Microbiota Composition
S Craig, D Blankenberg, A Parodi, I Paul, L Birch, J Savage, M Marini, ...
Biological Psychiatry 85 (10), S71, 2019
Mandates: US National Institutes of Health
Available somewhere: 43
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
Mandates: US National Science Foundation, US National Institutes of Health, UK …
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic acids research 44 (W1), W3-W10, 2016
Mandates: US National Science Foundation, US National Institutes of Health, UK …
Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ...
Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010
Mandates: US National Institutes of Health
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
Mandates: US National Institutes of Health, German Research Foundation, Netherlands …
Manipulation of FASTQ data with Galaxy
D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ...
Bioinformatics 26 (14), 1783-1785, 2010
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
Mandates: US National Institutes of Health
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
Mandates: US National Institutes of Health
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
Mandates: US National Science Foundation, US National Institutes of Health, Federal …
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
Mandates: US National Science Foundation, US National Institutes of Health, UK …
Cloudmap: a cloud-based pipeline for analysis of mutant genome sequences
G Minevich, DS Park, D Blankenberg, RJ Poole, O Hobert
Genetics 192 (4), 1249-1269, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15, 1-3, 2014
Mandates: US National Institutes of Health
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ...
Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014
Mandates: US Department of Energy, US National Institutes of Health
Child weight gain trajectories linked to oral microbiota composition
SJC Craig, D Blankenberg, ACL Parodi, IM Paul, LL Birch, JS Savage, ...
Scientific reports 8 (1), 14030, 2018
Mandates: US National Institutes of Health
Integrating diverse databases into an unified analysis framework: a Galaxy approach
D Blankenberg, N Coraor, G Von Kuster, J Taylor, A Nekrutenko
Database 2011, bar011, 2011
Mandates: US National Institutes of Health
Using galaxy to perform large‐scale interactive data analyses
J Hillman‐Jackson, D Clements, D Blankenberg, J Taylor, A Nekrutenko, ...
Current protocols in bioinformatics 38 (1), 10.5. 1-10.5. 47, 2012
Mandates: US National Institutes of Health
Making whole genome multiple alignments usable for biologists
D Blankenberg, J Taylor, A Nekrutenko, Galaxy Team
Bioinformatics 27 (17), 2426-2428, 2011
Mandates: US National Institutes of Health
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
K Qu, S Garamszegi, F Wu, H Thorvaldsdottir, T Liefeld, M Ocana, ...
Nature methods 13 (3), 245-247, 2016
Mandates: US National Institutes of Health
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
Mandates: US National Institutes of Health, European Commission
Galaxy Training: A powerful framework for teaching!
S Hiltemann, H Rasche, S Gladman, HR Hotz, D Larivière, D Blankenberg, ...
PLOS Computational Biology 19 (1), e1010752, 2023
Mandates: US National Science Foundation, US National Institutes of Health, Research …
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