Articles with public access mandates - Rui BenfeitasLearn more
Available somewhere: 35
A pathology atlas of the human cancer transcriptome
M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg, G Bidkhori, ...
Science 357 (6352), eaan2507, 2017
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council
Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
S Appelberg, S Gupta, S Svensson Akusjärvi, AT Ambikan, F Mikaeloff, ...
Emerging microbes & infections 9 (1), 1748-1760, 2020
Mandates: Canadian Institutes of Health Research, Knut and Alice Wallenberg Foundation …
Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes
G Bidkhori, R Benfeitas, M Klevstig, C Zhang, J Nielsen, M Uhlen, J Boren, ...
Proceedings of the National Academy of Sciences 115 (50), E11874-E11883, 2018
Mandates: Knut and Alice Wallenberg Foundation
Metabolic perturbation associated with COVID-19 disease severity and SARS-CoV-2 replication
S Krishnan, H Nordqvist, AT Ambikan, S Gupta, M Sperk, ...
Molecular & Cellular Proteomics 20, 2021
Mandates: Swedish Research Council
Understanding the representative gut microbiota dysbiosis in metformin-treated type 2 diabetes patients using genome-scale metabolic modeling
D Rosario, R Benfeitas, G Bidkhori, C Zhang, M Uhlen, S Shoaie, ...
Frontiers in physiology 9, 352912, 2018
Mandates: Knut and Alice Wallenberg Foundation
Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning
B Turanli, C Zhang, W Kim, R Benfeitas, M Uhlen, KY Arga, A Mardinoglu
EBioMedicine 42, 386-396, 2019
Mandates: Knut and Alice Wallenberg Foundation
New challenges to study heterogeneity in cancer redox metabolism
R Benfeitas, M Uhlen, J Nielsen, A Mardinoglu
Frontiers in cell and developmental biology 5, 65, 2017
Mandates: Knut and Alice Wallenberg Foundation
TCSBN: a database of tissue and cancer specific biological networks
S Lee, C Zhang, M Arif, Z Liu, R Benfeitas, G Bidkhori, S Deshmukh, ...
Nucleic acids research 46 (D1), D595-D600, 2018
Mandates: Knut and Alice Wallenberg Foundation
Metabolic network-based identification and prioritization of anticancer targets based on expression data in hepatocellular carcinoma
G Bidkhori, R Benfeitas, E Elmas, MN Kararoudi, M Arif, M Uhlen, ...
Frontiers in physiology 9, 393144, 2018
Mandates: Knut and Alice Wallenberg Foundation
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis
R Benfeitas, G Bidkhori, B Mukhopadhyay, M Klevstig, M Arif, C Zhang, ...
EBioMedicine 40, 471-487, 2019
Mandates: US National Institutes of Health, Knut and Alice Wallenberg Foundation
Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome
A Lovric, M Granér, E Bjornson, M Arif, R Benfeitas, K Nyman, M Ståhlman, ...
Scientific reports 8 (1), 14200, 2018
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non‐alcoholic fatty liver disease
C Zhang, E Bjornson, M Arif, A Tebani, A Lovric, R Benfeitas, M Ozcan, ...
Molecular Systems Biology 16 (4), e9495, 2020
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council
Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
N Acevedo, R Benfeitas, S Katayama, S Bruhn, A Andersson, G Wikberg, ...
Scientific Reports 10 (1), 18020, 2020
Mandates: Swedish Research Council
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity
AT Ambikan, H Yang, S Krishnan, SS Akusjärvi, S Gupta, M Lourda, ...
Cell systems 13 (8), 665-681. e4, 2022
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council
Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
M Arif, M Klevstig, R Benfeitas, S Doran, H Turkez, M Uhlén, M Clausen, ...
Elife 10, e66921, 2021
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council
The central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome
M Gelpi, F Mikaeloff, AD Knudsen, R Benfeitas, S Krishnan, SS Akusjärvi, ...
Aging (Albany NY) 13 (19), 22732, 2021
Mandates: Danish National Research Foundation, Swedish Research Council
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target
U Neogi, N Elaldi, S Appelberg, A Ambikan, E Kennedy, S Dowall, ...
Elife 11, e76071, 2022
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council, European …
Integrative lipidomics and metabolomics for system-level understanding of the metabolic syndrome in long-term treated HIV-infected individuals
S Olund Villumsen, R Benfeitas, AD Knudsen, M Gelpi, J Høgh, ...
Frontiers in Immunology 12, 742736, 2022
Mandates: Danish National Research Foundation, Swedish Research Council
Systems analysis reveals ageing-related perturbations in retinoids and sex hormones in Alzheimer’s and Parkinson’s diseases
S Lam, N Hartmann, R Benfeitas, C Zhang, M Arif, H Turkez, M Uhlén, ...
Biomedicines 9 (10), 1310, 2021
Mandates: US National Institutes of Health, Knut and Alice Wallenberg Foundation …
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning
E Mohammadi, R Benfeitas, H Turkez, J Boren, J Nielsen, M Uhlen, ...
Cancers 12 (9), 2694, 2020
Mandates: Knut and Alice Wallenberg Foundation
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