Articles with public access mandates - Rafael C. JimenezLearn more
Not available anywhere: 1
Proteomics data exchange and storage: the need for common standards and public repositories
RC Jiménez, JA Vizcaíno
Mass Spectrometry Data Analysis in Proteomics, 317-333, 2013
Mandates: US National Institutes of Health
Available somewhere: 32
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
S Orchard, M Ammari, B Aranda, L Breuza, L Briganti, F Broackes-Carter, ...
Nucleic acids research 42 (D1), D358-D363, 2014
Mandates: US National Institutes of Health, Fondazione Telethon, Italy, British Heart …
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
Mandates: Swiss National Science Foundation, US National Institutes of Health, UK …
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
B Aranda, H Blankenburg, S Kerrien, FSL Brinkman, A Ceol, E Chautard, ...
Nature methods 8 (7), 528-529, 2011
Mandates: US National Institutes of Health, Canadian Institutes of Health Research …
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
Mandates: US National Institutes of Health, Villum Foundation, UK Natural Environment …
Discovering and linking public omics data sets using the Omics Discovery Index
Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ...
Nature biotechnology 35 (5), 406-409, 2017
Mandates: US National Institutes of Health, National Natural Science Foundation of …
BioJS: an open source JavaScript framework for biological data visualization
J Gómez, LJ García, GA Salazar, J Villaveces, S Gore, A García, ...
Bioinformatics 29 (8), 1103-1104, 2013
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
Mandates: US Department of Energy, US National Institutes of Health, UK Biotechnology …
Four simple recommendations to encourage best practices in research software
RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ...
F1000Research 6, 2017
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Engineering …
Data integration in biological research: an overview
V Lapatas, M Stefanidakis, RC Jimenez, A Via, MV Schneider
Journal of Biological Research-Thessaloniki 22, 1-16, 2015
Mandates: UK Biotechnology and Biological Sciences Research Council, Wellcome Trust
A new reference implementation of the PSICQUIC web service
N del-Toro, M Dumousseau, S Orchard, RC Jimenez, E Galeota, ...
Nucleic acids research 41 (W1), W601-W606, 2013
Mandates: US National Institutes of Health, Canadian Institutes of Health Research …
Best practices in bioinformatics training for life scientists
A Via, T Blicher, E Bongcam-Rudloff, MD Brazas, C Brooksbank, A Budd, ...
Briefings in bioinformatics 14 (5), 528-537, 2013
Mandates: UK Biotechnology and Biological Sciences Research Council
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study
JM Villaveces, RC Jimenez, P Porras, N del-Toro, M Duesbury, ...
Database 2015, bau131, 2015
Mandates: US National Institutes of Health, European Commission
Uniform resolution of compact identifiers for biomedical data
SM Wimalaratne, N Juty, J Kunze, G Janée, JA McMurry, N Beard, ...
Scientific data 5 (1), 1-8, 2018
Mandates: US National Institutes of Health, European Molecular Biology Laboratory …
Integration of cardiac proteome biology and medicine by a specialized knowledgebase
NC Zong, H Li, H Li, MPY Lam, RC Jimenez, CS Kim, N Deng, AK Kim, ...
Circulation research 113 (9), 1043-1053, 2013
Mandates: US National Institutes of Health
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
Mandates: US National Institutes of Health, European Commission
Teaching the fundamentals of biological data integration using classroom games
MV Schneider, RC Jimenez
PLoS computational biology 8 (12), e1002789, 2012
Mandates: US National Institutes of Health
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers
M Corpas, RC Jimenez, E Bongcam-Rudloff, A Budd, MD Brazas, ...
Bioinformatics 31 (1), 140-142, 2015
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
BioJS: an open source standard for biological visualisation–its status in 2014
M Corpas, R Jimenez, SJ Carbon, A García, L Garcia, T Goldberg, ...
F1000Research 3, 2014
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
General guidelines for biomedical software development
LB Silva, RC Jimenez, N Blomberg, JL Oliveira
F1000Research 6, 2017
Mandates: European Commission
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