Articles with public access mandates - Michael R. HoopmannLearn more
Not available anywhere: 1
ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments
M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ...
Journal of proteome research 16 (2), 945-957, 2017
Mandates: US National Institutes of Health
Available somewhere: 64
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ...
Cell 166 (3), 766-778, 2016
Mandates: Swiss National Science Foundation, US National Institutes of Health …
The 5300-year-old Helicobacter pylori genome of the Iceman
F Maixner, B Krause-Kyora, D Turaev, A Herbig, MR Hoopmann, ...
Science 351 (6269), 162-165, 2016
Mandates: US National Institutes of Health, European Commission
A Deeper Look into Comet—Implementation and Features
JK Eng, MR Hoopmann, TA Jahan, JD Egertson, WS Noble, MJ MacCoss
Journal of The American Society for Mass Spectrometry 26 (11), 1865-1874, 2015
Mandates: US National Institutes of Health
Kojak: efficient analysis of chemically cross-linked protein complexes
MR Hoopmann, A Zelter, RS Johnson, M Riffle, MJ MacCoss, TN Davis, ...
Journal of proteome research 14 (5), 2190-2198, 2015
Mandates: US National Institutes of Health
Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry
M Bern, G Finney, MR Hoopmann, G Merrihew, MJ Toth, MJ MacCoss
Analytical chemistry 82 (3), 833-841, 2010
Mandates: US National Institutes of Health
Crux: rapid open source protein tandem mass spectrometry analysis
S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ...
Journal of proteome research 13 (10), 4488-4491, 2014
Mandates: US National Institutes of Health
Comparison of database search strategies for high precursor mass accuracy MS/MS data
EJ Hsieh, MR Hoopmann, B MacLean, MJ MacCoss
Journal of proteome research 9 (2), 1138-1143, 2010
Mandates: US National Institutes of Health
The state of the human proteome in 2012 as viewed through PeptideAtlas
T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ...
Journal of proteome research 12 (1), 162-171, 2013
Mandates: US National Institutes of Health
First community-wide, comparative cross-linking mass spectrometry study
C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ...
Analytical chemistry 91 (11), 6953-6961, 2019
Mandates: US National Institutes of Health, UK Medical Research Council, Wellcome …
Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification
CR Weisbrod, JK Eng, MR Hoopmann, T Baker, JE Bruce
Journal of proteome research 11 (3), 1621-1632, 2012
Mandates: US National Institutes of Health
Cross-linking measurements of in vivo protein complex topologies
C Zheng, L Yang, MR Hoopmann, JK Eng, X Tang, CR Weisbrod, ...
Molecular & Cellular Proteomics 10 (10), 2011
Mandates: US National Institutes of Health
Assessing the dynamic range and peak capacity of nanoflow LC− FAIMS− MS on an ion trap mass spectrometer for proteomics
JD Canterbury, X Yi, MR Hoopmann, MJ MacCoss
Analytical chemistry 80 (18), 6888-6897, 2008
Mandates: US National Institutes of Health
PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline
DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ...
Journal of proteome research 18 (12), 4262-4272, 2019
Mandates: US National Institutes of Health, Cancer Research UK, UK Medical Research …
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
H Roume, A Heintz-Buschart, EEL Muller, P May, VP Satagopam, ...
Npj Biofilms And Microbiomes 1, 2015
Mandates: US National Institutes of Health
The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching
L Yang, B Vaitheesvaran, K Hartil, AJ Robinson, MR Hoopmann, JK Eng, ...
Journal of proteome research 10 (9), 4134-4149, 2011
Mandates: US National Institutes of Health
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ...
Nature communications 5 (1), 5603, 2014
Mandates: US Department of Energy, US National Institutes of Health
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ...
Nature communications 11 (1), 5281, 2020
Mandates: US National Institutes of Health, Luxembourg National Research Fund
Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling
MD Dean, GD Findlay, MR Hoopmann, CC Wu, MJ MacCoss, ...
BMC genomics 12, 1-13, 2011
Mandates: US National Institutes of Health
Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures
MR Hoopmann, GE Merrihew, PD Von Haller, MJ MacCoss
Journal of proteome research 8 (4), 1870-1875, 2009
Mandates: US National Institutes of Health
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