Articles with public access mandates - Francesc CollLearn more
Available somewhere: 67
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigão, ...
Nature communications 5 (1), 4812, 2014
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, Wellcome Trust
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ...
Genome medicine 7, 1-10, 2015
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, UK Medical Research …
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ...
Nature genetics 50 (2), 307-316, 2018
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, UK Biotechnology and …
Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ...
Elife 4, e05166, 2015
Mandates: Wellcome Trust
Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a …
JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ...
The Journal of infectious diseases 211 (7), 1154-1163, 2015
Mandates: Wellcome Trust
The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis
TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ...
The Lancet Microbe 3 (4), e265-e273, 2022
Mandates: Fundação de Amparo à Pesquisa do Estado de São Paulo, Swiss National Science …
One health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock
C Ludden, KE Raven, D Jamrozy, T Gouliouris, B Blane, F Coll, ...
MBio 10 (1), 10.1128/mbio. 02693-18, 2019
Mandates: UK Medical Research Council, National Institute for Health Research, UK …
Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community
F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ...
Science translational medicine 9 (413), eaak9745, 2017
Mandates: UK Biotechnology and Biological Sciences Research Council, Chief Scientist …
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant
P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ...
Science 374 (6574), eabl9551, 2021
Mandates: UK Biotechnology and Biological Sciences Research Council, British Heart …
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance
J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ...
BMC medicine 14, 1-13, 2016
Mandates: National Health and Medical Research Council, Australia, UK Biotechnology …
PolyTB: a genomic variation map for Mycobacterium tuberculosis
F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ...
Tuberculosis 94 (3), 346-354, 2014
Mandates: Wellcome Trust
Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ...
Scientific reports 5 (1), 15443, 2015
Mandates: UK Medical Research Council
Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing
KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ...
Clinical infectious diseases 64 (7), 886-893, 2017
Mandates: UK Medical Research Council, Wellcome Trust
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages
JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ...
BMC genomics 17, 1-12, 2016
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing
TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ...
PloS one 8 (12), e83012, 2013
Mandates: Wellcome Trust
Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis
F Coll, KE Raven, GM Knight, B Blane, EM Harrison, D Leek, DA Enoch, ...
The Lancet Microbe 1 (8), e328-e335, 2020
Mandates: UK Medical Research Council, National Institute for Health Research, UK …
Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting
J Perdigão, H Silva, D Machado, R Macedo, F Maltez, C Silva, L Jordao, ...
BMC genomics 15, 1-20, 2014
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, UK Medical Research …
Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance
T Gouliouris, F Coll, C Ludden, B Blane, KE Raven, P Naydenova, ...
Nature microbiology 6 (1), 103-111, 2021
Mandates: Academy of Medical Sciences, UK, UK Medical Research Council, National …
Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus
EM Harrison, X Ba, F Coll, B Blane, O Restif, H Carvell, CU Köser, ...
Nature microbiology 4 (10), 1680-1691, 2019
Mandates: UK Medical Research Council, Wellcome Trust, UK Research & Innovation
Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
C Ludden, S Reuter, K Judge, T Gouliouris, B Blane, F Coll, P Naydenova, ...
Microbial genomics 3 (7), e000114, 2017
Mandates: National Institute for Health Research, UK, Wellcome Trust
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