Articles with public access mandates - Brian G. PierceLearn more
OverallNIHCancer Research UKEuropean CommissionDOECIHRNSFNSFCMRCHHMIResearch Council of LithuaniaNWOWellcomeGovernment of SpainDFGKnut and Alice Wallenberg FoundationBBSRCANRNCNFAPESPSNSFGatesDoDUSDAAHANHMRCEMBLDFFINSERMSwedish Research CouncilDoris Duke Charitable FoundationGovernment of ItalyUK Research & InnovationDamon Runyon Cancer Research FoundationCPRIT
Available somewhere: 81
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
Mandates: US National Institutes of Health
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
Mandates: US National Institutes of Health
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library
BG Pierce, Y Hourai, Z Weng
PloS one 6 (9), e24657, 2011
Mandates: US National Institutes of Health
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
Mandates: US National Institutes of Health, Cancer Research UK
Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ...
Nucleic acids research 41 (D1), D171-D176, 2012
Mandates: US National Institutes of Health
Protein–protein docking benchmark version 3.0
H Hwang, B Pierce, J Mintseris, J Janin, Z Weng
Proteins: Structure, Function, and Bioinformatics 73 (3), 705-709, 2008
Mandates: US National Institutes of Health
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants
R Yin, BY Feng, A Varshney, BG Pierce
Protein Science 31 (8), e4379, 2022
Mandates: US National Institutes of Health
A combination of rescoring and refinement significantly improves protein docking performance
B Pierce, Z Weng
Proteins: Structure, Function, and Bioinformatics 72 (1), 270-279, 2008
Mandates: US National Institutes of Health
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Mandates: US National Science Foundation, US National Institutes of Health …
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Canadian …
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
Mandates: US National Science Foundation, US National Institutes of Health, Canadian …
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Canadian …
Structure‐based design of a T‐cell receptor leads to nearly 100‐fold improvement in binding affinity for pepMHC
JN Haidar, B Pierce, Y Yu, W Tong, M Li, Z Weng
Proteins: Structure, Function, and Bioinformatics 74 (4), 948-960, 2009
Mandates: US National Institutes of Health
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
Mandates: US National Science Foundation, US Department of Energy, US National …
Computational design of the affinity and specificity of a therapeutic T cell receptor
BG Pierce, LM Hellman, M Hossain, NK Singh, CW Vander Kooi, Z Weng, ...
PLoS computational biology 10 (2), e1003478, 2014
Mandates: US National Institutes of Health
An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants
JD Guest, T Vreven, J Zhou, I Moal, JR Jeliazkov, JJ Gray, Z Weng, ...
Structure 29 (6), 606-621. e5, 2021
Mandates: US National Science Foundation, US National Institutes of Health
A flexible docking approach for prediction of T cell receptor–peptide–MHC complexes
BG Pierce, Z Weng
Protein Science 22 (1), 35-46, 2013
Mandates: US National Institutes of Health
Global mapping of antibody recognition of the hepatitis C virus E2 glycoprotein: Implications for vaccine design
BG Pierce, ZY Keck, P Lau, C Fauvelle, R Gowthaman, TF Baumert, ...
Proceedings of the National Academy of Sciences 113 (45), E6946-E6954, 2016
Mandates: US National Institutes of Health
Cutting edge: evidence for a dynamically driven T cell signaling mechanism
WF Hawse, MM Champion, MV Joyce, LM Hellman, M Hossain, V Ryan, ...
The Journal of Immunology 188 (12), 5819-5823, 2012
Mandates: US National Institutes of Health
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