Articles with public access mandates - Lukas KällLearn more
Not available anywhere: 5
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
RMM Branca, LM Orre, HJ Johansson, V Granholm, M Huss, ...
Nature methods 11 (1), 59-62, 2014
Mandates: US National Institutes of Health, Swedish Research Council
Training, selection, and robust calibration of retention time models for targeted proteomics
L Moruz, D Tomazela, L Kall
Journal of proteome research 9 (10), 5209-5216, 2010
Mandates: Swedish Research Council
Chromatographic retention time prediction for posttranslationally modified peptides
L Moruz, A Staes, JM Foster, M Hatzou, E Timmerman, L Martens, L Käll
Proteomics 12 (8), 1151-1159, 2012
Mandates: Swedish Research Council
Quality assessments of peptide–spectrum matches in shotgun proteomics
V Granholm, L Käll
Proteomics 11 (6), 1086-1093, 2011
Mandates: Swedish Research Council
IPeak: An open source tool to combine results from multiple MS/MS search engines
B Wen, C Du, G Li, F Ghali, AR Jones, L Käll, S Xu, R Zhou, Z Ren, ...
Proteomics 15 (17), 2916-2920, 2015
Mandates: National Natural Science Foundation of China, UK Biotechnology and …
Available somewhere: 50
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
Mandates: Swedish Research Council
Improvements to the percolator algorithm for peptide identification from shotgun proteomics data sets
M Spivak, J Weston, L Bottou, L Kall, WS Noble
Journal of proteome research 8 (7), 3737-3745, 2009
Mandates: US National Institutes of Health
Fast and accurate protein false discovery rates on large-scale proteomics data sets with Percolator 3.0
M The, MJ MacCoss, WS Noble, L Käll
J. Am. Soc. Mass Spectrom 27 (11), 1719, 2016
Mandates: US National Institutes of Health
Transmembrane topology and signal peptide prediction using dynamic bayesian networks
SM Reynolds, L Käll, ME Riffle, JA Bilmes, WS Noble
PLoS computational biology 4 (11), e1000213, 2008
Mandates: US National Institutes of Health
Rapid and accurate peptide identification from tandem mass spectra
CY Park, AA Klammer, L Kall, MJ MacCoss, WS Noble
Journal of proteome research 7 (7), 3022-3027, 2008
Mandates: US National Institutes of Health
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry
L Käll, JD Storey, WS Noble
Bioinformatics 24 (16), i42-i48, 2008
Mandates: US National Institutes of Health
Peptide-centric proteome analysis: an alternative strategy for the analysis of tandem mass spectrometry data
YS Ting, JD Egertson, SH Payne, S Kim, B MacLean, L Käll, R Aebersold, ...
Molecular & Cellular Proteomics 14 (9), 2301-2307, 2015
Mandates: US Department of Energy, US National Institutes of Health, European Commission
Multi-omic data analysis using Galaxy
J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ...
Nature biotechnology 33 (2), 137-139, 2015
Mandates: Swedish Research Council
Crux: rapid open source protein tandem mass spectrometry analysis
S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ...
Journal of proteome research 13 (10), 4488-4491, 2014
Mandates: US National Institutes of Health
Growth of cyanobacteria is constrained by the abundance of light and carbon assimilation proteins
M Jahn, V Vialas, J Karlsen, G Maddalo, F Edfors, B Forsström, M Uhlén, ...
Cell reports 25 (2), 478-486. e8, 2018
Mandates: Swedish Research Council for Environment, Agricultural Sciences and Spatial …
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations
GE Merrihew, C Davis, B Ewing, G Williams, L Käll, BE Frewen, WS Noble, ...
Genome research 18 (10), 1660-1669, 2008
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
qvality: non-parametric estimation of q-values and posterior error probabilities
L Käll, JD Storey, WS Noble
Bioinformatics 25 (7), 964-966, 2009
Mandates: US National Institutes of Health
Fast and accurate database searches with MS-GF+ Percolator
V Granholm, S Kim, JCF Navarro, E Sjolund, RD Smith, L Kall
Journal of proteome research 13 (2), 890-897, 2014
Mandates: US National Institutes of Health, Swedish Research Council
Automated model building and protein identification in cryo-EM maps
K Jamali, L Käll, R Zhang, A Brown, D Kimanius, SHW Scheres
Nature 628 (8007), 450-457, 2024
Mandates: Knut and Alice Wallenberg Foundation, UK Medical Research Council, European …
Computational mass spectrometry–based proteomics
L Käll, O Vitek
PLoS computational biology 7 (12), e1002277, 2011
Mandates: Swedish Research Council
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