Articles with public access mandates - Dipti D NayakLearn more
Available somewhere: 19
Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans
DD Nayak, WW Metcalf
Proceedings of the National Academy of Sciences 114 (11), 2976-2981, 2017
Mandates: US Department of Energy
Post-translational thioamidation of methyl-coenzyme M reductase, a key enzyme in methanogenic and methanotrophic Archaea
DD Nayak, N Mahanta, DA Mitchell, WW Metcalf
Elife 6, e29218, 2017
Mandates: US Department of Energy, US National Institutes of Health
Genetic and Phenotypic Comparison of Facultative Methylotrophy between Methylobacterium extorquens Strains PA1 and AM1
DD Nayak, CJ Marx
PLoS One 9 (9), e107887, 2014
Mandates: US National Institutes of Health
Methylamine Utilization via the N-Methylglutamate Pathway in Methylobacterium extorquens PA1 Involves a Novel Flow of Carbon through C1 Assimilation and …
DD Nayak, CJ Marx
Journal of bacteriology 196 (23), 4130-4139, 2014
Mandates: US National Institutes of Health
Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans
DD Nayak, A Liu, N Agrawal, R Rodriguez-Carerro, SH Dong, DA Mitchell, ...
PLoS biology 18 (2), e3000507, 2020
Mandates: US Department of Energy, US National Institutes of Health
EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde
JV Bazurto, DD Nayak, T Ticak, M Davlieva, JA Lee, CN Hellenbrand, ...
PLoS biology 19 (5), e3001208, 2021
Mandates: US National Science Foundation, US Department of Energy, US Department of …
Selection maintains apparently degenerate metabolic pathways due to tradeoffs in using methylamine for carbon versus nitrogen
DD Nayak, D Agashe, MC Lee, CJ Marx
Current Biology 26 (11), 1416-1426, 2016
Mandates: US National Institutes of Health
Experimental horizontal gene transfer of methylamine dehydrogenase mimics prevalent exchange in nature and overcomes the methylamine growth constraints posed by the sub-optimal …
DD Nayak, CJ Marx
Microorganisms 3 (1), 60-79, 2015
Mandates: US National Institutes of Health
Transcriptional regulation of methanogenic metabolism in archaea
KE Shalvarjian, DD Nayak
Current Opinion in Microbiology 60, 8-15, 2021
Mandates: US National Institutes of Health
Genetic techniques for studies of methyl-coenzyme M reductase from Methanosarcina acetivorans C2A
DD Nayak, WW Metcalf
Methods in Enzymology 613, 325-347, 2018
Mandates: US Department of Energy
The dual role of a multi‐heme cytochrome in methanogenesis: MmcA is important for energy conservation and carbon metabolism in Methanosarcina acetivorans
BE Downing, D Gupta, DD Nayak
Molecular Microbiology 119 (3), 350-363, 2023
Mandates: US National Institutes of Health, Gordon and Betty Moore Foundation, Chan …
Methylamine-specific methyltransferase paralogs in Methanosarcina are functionally distinct despite frequent gene conversion
DD Nayak, WW Metcalf
The ISME Journal 13 (9), 2173-2182, 2019
Mandates: US Department of Energy
McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly
GL Chadwick, AMN Joiner, S Ramesh, DA Mitchell, DD Nayak
Proceedings of the National Academy of Sciences 120 (25), e2302815120, 2023
Mandates: US National Institutes of Health, Chan Zuckerberg Initiative
An Archaea-specific c-type cytochrome maturation machinery is crucial for methanogenesis in Methanosarcina acetivorans
D Gupta, KE Shalvarjian, DD Nayak
Elife 11, e76970, 2022
Mandates: Gordon and Betty Moore Foundation
MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in Methanosarcina acetivorans
D Gupta, K Chen, SJ Elliott, DD Nayak
Nature Communications 15 (1), 3300, 2024
Mandates: Chan Zuckerberg Initiative
Biogenesis and Function of c-type Cytochromes in the Methanogenic Archaeon, Methanosarcina acetivorans
D Gupta, KE Shalvarjian, DD Nayak
bioRxiv, 2022.01. 26.477811, 2022
Mandates: Gordon and Betty Moore Foundation
Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in Methanosarcina acetivorans
GL Chadwick, GA Dury, DD Nayak
Applied and Environmental Microbiology 90 (7), e02220-23, 2024
Mandates: Chan Zuckerberg Initiative
Genome editing in Archaea
WW Metcalf, DD Nayak
Univ. of Illinois at Urbana-Champaign, IL (United States), 2023
Mandates: US Department of Energy
Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in Methanosarcina acetivorans
DD Nayak, GL Chadwick, GA Dury
bioRxiv, 2023.12. 13.571449, 2023
Mandates: Chan Zuckerberg Initiative
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