Articles with public access mandates - Fredrik LevanderLearn more
Not available anywhere: 7
Data processing methods and quality control strategies for label-free LC–MS protein quantification
M Sandin, J Teleman, J Malmström, F Levander
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (1), 29-41, 2014
Mandates: Swedish Research Council
Data processing has major impact on the outcome of quantitative label-free LC-MS analysis
A Chawade, M Sandin, J Teleman, J Malmstrom, F Levander
Journal of proteome research 14 (2), 676-687, 2015
Mandates: Swedish Research Council, European Commission, Swedish Foundation for …
Generic workflow for quality assessment of quantitative label‐free LC‐MS analysis
M Sandin, M Krogh, K Hansson, F Levander
Proteomics 11 (6), 1114-1124, 2011
Mandates: Swedish Research Council
Critical comparison of multidimensional separation methods for increasing protein expression coverage
L Antberg, P Cifani, M Sandin, F Levander, P James
Journal of Proteome Research 11 (5), 2644-2652, 2012
Mandates: Swedish Research Council
Multimodel pathway enrichment methods for functional evaluation of expression regulation
U Kirik, P Cifani, AS Albrekt, M Lindstedt, A Heyden, F Levander
Journal of Proteome Research 11 (5), 2955-2967, 2012
Mandates: Swedish Research Council
Automated quality control system for LC-SRM setups
J Teleman, S Waldemarson, J Malmström, F Levander
Journal of proteomics 95, 77-83, 2013
Mandates: Swedish Research Council
Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis
P Cifani, M Bendz, K Wårell, K Hansson, F Levander, M Sandin, ...
Journal of Proteome Research 10 (4), 1645-1656, 2011
Mandates: Swedish Research Council
Available somewhere: 49
mzML—a community standard for mass spectrometry data
L Martens, M Chambers, M Sturm, D Kessner, F Levander, J Shofstahl, ...
Molecular & Cellular Proteomics 10 (1), 2011
Mandates: US National Institutes of Health
Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets
A Chawade, E Alexandersson, F Levander
Journal of proteome research 13 (6), 3114-3120, 2014
Mandates: US National Institutes of Health, Swedish Foundation for Strategic …
Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML
O Lindblad, E Cordero, A Puissant, L Macaulay, A Ramos, NN Kabir, ...
Oncogene 35 (39), 5119-5131, 2016
Mandates: US National Institutes of Health, Swedish Research Council
DIANA—algorithmic improvements for analysis of data-independent acquisition MS data
J Teleman, HL Röst, G Rosenberger, U Schmitt, L Malmström, ...
Bioinformatics 31 (4), 555-562, 2015
Mandates: Swedish Research Council, European Commission, Swedish Foundation for …
Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, ...
BMC plant biology 14, 1-17, 2014
Mandates: Australian Research Council, Swedish Research Council for Environment …
The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
G Mayer, L Montecchi-Palazzi, D Ovelleiro, AR Jones, PA Binz, ...
Database 2013, bat009, 2013
Mandates: US National Institutes of Health, Swedish Research Council
Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions
A Ali, E Alexandersson, M Sandin, S Resjö, M Lenman, P Hedley, ...
BMC genomics 15, 1-18, 2014
Mandates: Swedish Research Council for Environment, Agricultural Sciences and Spatial …
Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach
T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, ...
BMC genomics 15, 1-19, 2014
Mandates: Swedish Research Council for Environment, Agricultural Sciences and Spatial …
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
MA Rojas-Macias, J Mariethoz, P Andersson, C Jin, V Venkatakrishnan, ...
Nature communications 10 (1), 3275, 2019
Mandates: Swedish Research Council
TraML—a standard format for exchange of selected reaction monitoring transition lists
EW Deutsch, M Chambers, S Neumann, F Levander, PA Binz, J Shofstahl, ...
Molecular & Cellular Proteomics 11 (4), 2012
Mandates: US National Institutes of Health
Dinosaur: a refined open-source peptide MS feature detector
J Teleman, A Chawade, M Sandin, F Levander, J Malmstrom
Journal of proteome research 15 (7), 2143-2151, 2016
Mandates: Swedish Research Council, European Commission, Swedish Foundation for …
Is label‐free LC‐MS/MS ready for biomarker discovery?
M Sandin, A Chawade, F Levander
PROTEOMICS–Clinical Applications 9 (3-4), 289-294, 2015
Mandates: Swedish Research Council, Swedish Foundation for Strategic Environmental …
Numerical compression schemes for proteomics mass spectrometry data
J Teleman, AW Dowsey, FF Gonzalez-Galarza, S Perkins, B Pratt, ...
Molecular & Cellular Proteomics 13 (6), 1537-1542, 2014
Mandates: US National Institutes of Health, Swedish Research Council, UK Biotechnology …
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