Articles with public access mandates - Stephanie J SpielmanLearn more
Not available anywhere: 1
The evolving redox chemistry and bioavailability of vanadium in deep time
EK Moore, J Hao, SJ Spielman, N Yee
Geobiology 18 (2), 127-138, 2020
Mandates: US National Aeronautics and Space Administration, Agence Nationale de la …
Available somewhere: 27
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
Mandates: US National Institutes of Health
Maximum allowed solvent accessibilites of residues in proteins
MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke
PloS one 8 (11), e80635, 2013
Mandates: US National Institutes of Health
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
Mandates: US National Institutes of Health, UK Engineering and Physical Sciences …
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
Mandates: US National Science Foundation, US National Institutes of Health, Government …
Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2
Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ...
Journal of Cell Biology 216 (1), 167-179, 2017
Mandates: Swiss National Science Foundation, US National Institutes of Health
The Relationship between dN/dS and Scaled Selection Coefficients
SJ Spielman, CO Wilke
Molecular biology and evolution 32 (4), 1097-1108, 2015
Mandates: US National Institutes of Health
Pyvolve: a flexible Python module for simulating sequences along phylogenies
SJ Spielman, CO Wilke
PloS one 10 (9), e0139047, 2015
Mandates: US National Institutes of Health
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79, 130-142, 2014
Mandates: US National Institutes of Health
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
AG Meyer, SJ Spielman, T Bedford, CO Wilke
Virus Evolution 1 (1), vev006, 2015
Mandates: US National Institutes of Health
Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors
SJ Spielman, CO Wilke
Journal of Molecular Evolution 76, 172-182, 2013
Mandates: US National Institutes of Health
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
Mandates: US National Science Foundation, US Department of Defense, US National …
Extensively parameterized mutation–selection models reliably capture site-specific selective constraint
SJ Spielman, CO Wilke
Molecular biology and evolution 33 (11), 2990-3002, 2016
Mandates: US National Science Foundation, US National Institutes of Health
OpenPBTA: The Open Pediatric Brain Tumor Atlas
JA Shapiro, KS Gaonkar, SJ Spielman, CL Savonen, CJ Bethell, R Jin, ...
Cell genomics 3 (7), 2023
Mandates: US National Institutes of Health, Alex's Lemonade Stand
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors
SJ Spielman, K Kumar, CO Wilke
PeerJ 3, e773, 2015
Mandates: US National Institutes of Health
Relative evolutionary rate inference in HyPhy with LEISR
SJ Spielman, SL Kosakovsky Pond
PeerJ 6, e4339, 2018
Mandates: US National Institutes of Health
Relative evolutionary rates in proteins are largely insensitive to the substitution model
SJ Spielman, SL Kosakovsky Pond
Molecular Biology and Evolution, 2018
Mandates: US National Institutes of Health
Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein
EL Jackson, SJ Spielman, CO Wilke
PloS one 12 (4), e0164905, 2017
Mandates: US National Science Foundation, US Department of Defense, US National …
A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation
SJ Spielman, S Wan, CO Wilke
Genetics 204 (2), 499-511, 2016
Mandates: US National Science Foundation, US National Institutes of Health
Limited utility of residue masking for positive-selection inference
SJ Spielman, ET Dawson, CO Wilke
Molecular biology and evolution 31 (9), 2496-2500, 2014
Mandates: US National Institutes of Health
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