Articles with public access mandates - Brendan MacLeanLearn more
Not available anywhere: 3
ABRF Proteome Informatics Research Group (iPRG) 2015 Study: detection of differentially abundant proteins in label-free quantitative LC–MS/MS experiments
M Choi, ZF Eren-Dogu, C Colangelo, J Cottrell, MR Hoopmann, EA Kapp, ...
Journal of proteome research 16 (2), 945-957, 2017
Mandates: US National Institutes of Health
MS1 Label-free Quantification Using Ion Intensity Chromatograms in Skyline (Research and Clinical Applications)
B Schilling, BX MacLean, A D'Souza, MJ Rardin, NJ Shulman, ...
Mandates: US National Institutes of Health
Informatics Solutions for Selected Reaction Monitoring
B Schilling, B Maclean, JM Held, BW Gibson
Mandates: US National Institutes of Health
Available somewhere: 60
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ...
Bioinformatics 26 (7), 966-968, 2010
Mandates: US National Institutes of Health
A cross-platform toolkit for mass spectrometry and proteomics
MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ...
Nature biotechnology 30 (10), 918-920, 2012
Mandates: US National Institutes of Health
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
Mandates: US National Science Foundation, US National Institutes of Health, UK …
Using i RT, a normalized retention time for more targeted measurement of peptides
C Escher, L Reiter, B MacLean, R Ossola, F Herzog, J Chilton, ...
Proteomics 12 (8), 1111-1121, 2012
Mandates: US National Institutes of Health
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics
LK Pino, BC Searle, JG Bollinger, B Nunn, B MacLean, MJ MacCoss
Mass spectrometry reviews 39 (3), 229-244, 2020
Mandates: US National Institutes of Health
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach
SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ...
Molecular & Cellular Proteomics 13 (3), 907-917, 2014
Mandates: US National Institutes of Health
Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ...
Molecular & Cellular Proteomics 11 (5), 202-214, 2012
Mandates: US National Institutes of Health
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
BC Searle, LK Pino, JD Egertson, YS Ting, RT Lawrence, BX MacLean, ...
Nature communications 9 (1), 5128, 2018
Mandates: US National Institutes of Health
Building high-quality assay libraries for targeted analysis of SWATH MS data
OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ...
Nature protocols 10 (3), 426-441, 2015
Mandates: European Commission
Multiplexed MS/MS for improved data-independent acquisition
JD Egertson, A Kuehn, GE Merrihew, NW Bateman, BX MacLean, YS Ting, ...
Nature methods 10 (8), 744-746, 2013
Mandates: US National Institutes of Health
A multicenter study benchmarks software tools for label-free proteome quantification
P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ...
Nature biotechnology 34 (11), 1130-1136, 2016
Mandates: Swiss National Science Foundation, US National Institutes of Health, German …
Skyline for small molecules: a unifying software package for quantitative metabolomics
KJ Adams, B Pratt, N Bose, LG Dubois, L St. John-Williams, KM Perrott, ...
Journal of proteome research 19 (4), 1447-1458, 2020
Mandates: US Department of Defense, US National Institutes of Health, Canadian …
The ProteomeXchange consortium at 10 years: 2023 update
EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ...
Nucleic acids research 51 (D1), D1539-D1548, 2023
Mandates: US National Science Foundation, US National Institutes of Health, National …
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
B MacLean, DM Tomazela, SE Abbatiello, S Zhang, JR Whiteaker, ...
Analytical chemistry 82 (24), 10116-10124, 2010
Mandates: US National Institutes of Health
Multiplexed peptide analysis using data-independent acquisition and Skyline
JD Egertson, B MacLean, R Johnson, Y Xuan, MJ MacCoss
Nature protocols 10 (6), 887-903, 2015
Mandates: US National Institutes of Health
Panorama: a targeted proteomics knowledge base
V Sharma, J Eckels, GK Taylor, NJ Shulman, AB Stergachis, SA Joyner, ...
Journal of proteome research 13 (9), 4205-4210, 2014
Mandates: US National Institutes of Health
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ...
Nature methods 14 (9), 921-927, 2017
Mandates: Swiss National Science Foundation, US National Institutes of Health …
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