Articles with public access mandates - Sheina SimLearn more
Not available anywhere: 1
Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae)
JR Dupuis, SB Sim, M San Jose, L Leblanc, MA Hoassain, D Rubinoff, ...
Biological Invasions 20, 1211-1228, 2018
Mandates: US National Institutes of Health, US Department of Agriculture
Available somewhere: 25
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly …
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 17, 1-31, 2016
Mandates: US National Science Foundation, US Department of Energy, US National …
HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly
SB Sim, RL Corpuz, TJ Simmonds, SM Geib
BMC genomics 23 (1), 157, 2022
Mandates: US Department of Energy, US Department of Agriculture
Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission
SM Geib, B Hall, T Derego, FT Bremer, K Cannoles, SB Sim
Gigascience 7 (4), giy018, 2018
Mandates: US National Science Foundation, US Department of Agriculture
The USDA-ARS Ag100Pest initiative: high-quality genome assemblies for agricultural pest arthropod research
AK Childers, SM Geib, SB Sim, MF Poelchau, BS Coates, TJ Simmonds, ...
Insects 12 (7), 626, 2021
Mandates: US Department of Energy, US Department of Agriculture
Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies
SM Geib, GH Liang, TD Murphy, SB Sim
G3: Genes, Genomes, Genetics 7 (8), 2407-2411, 2017
Mandates: US National Institutes of Health, US Department of Agriculture
White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter
CM Ward, RA Aumann, MA Whitehead, K Nikolouli, G Leveque, G Gouvi, ...
Nature Communications 12 (1), 491, 2021
Mandates: US Department of Agriculture, Australian Research Council, Genome Canada …
A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of white pupae
SB Sim, SM Geib
G3: Genes, Genomes, Genetics 7 (6), 1927-1940, 2017
Mandates: US National Institutes of Health, US Department of Agriculture
Draft Genome of the Rice Coral Montipora capitata Obtained from Linked-Read Sequencing
M Helmkampf, MR Bellinger, SM Geib, SB Sim, M Takabayashi
Genome biology and evolution 11 (7), 2045-2054, 2019
Mandates: US National Science Foundation
The ABCs of CRISPR in Tephritidae: developing methods for inducing heritable mutations in the genera Anastrepha, Bactrocera and Ceratitis
SB Sim, AN Kauwe, REY Ruano, P Rendon, SM Geib
Insect Molecular Biology 28 (2), 277-289, 2019
Mandates: US Department of Agriculture
Transpacific coalescent pathways of coconut rhinoceros beetle biotypes: Resistance to biological control catalyses resurgence of an old pest
JB Reil, C Doorenweerd, M San Jose, SB Sim, SM Geib, D Rubinoff
Molecular Ecology 27 (22), 4459-4474, 2018
Mandates: US National Institutes of Health, US Department of Agriculture
Taro genome assembly and linkage map reveal QTLs for resistance to taro leaf blight
MR Bellinger, R Paudel, S Starnes, L Kambic, MB Kantar, T Wolfgruber, ...
G3: Genes, Genomes, Genetics 10 (8), 2763-2775, 2020
Mandates: US National Science Foundation, US Department of Agriculture
Molecular markers detect cryptic predation on coffee berry borer (Coleoptera: Curculionidae) by silvanid and laemophloeid flat bark beetles (Coleoptera: Silvanidae …
SB Sim, NM Yoneishi, E Brill, SM Geib, PA Follett
Journal of economic entomology 109 (1), 100-105, 2016
Mandates: US Department of Agriculture
Rapid and repeatable host plant shifts drive reproductive isolation following a recent human-mediated introduction of the apple maggot fly, Rhagoletis pomonella
GR Hood, THQ Powell, MM Doellman, SB Sim, M Glover, WL Yee, ...
Evolution 74 (1), 156-168, 2020
Mandates: US National Science Foundation, US Department of Agriculture
A New Diagnostic Resource for Ceratitis capitata Strain Identification Based on QTL Mapping
SB Sim, R Ruiz-Arce, NB Barr, SM Geib
G3: Genes, Genomes, Genetics 7 (11), 3637-3647, 2017
Mandates: US Department of Agriculture
A unified protocol for CRISPR/Cas9-mediated gene knockout in tephritid fruit flies led to the recreation of white eye and white Puparium phenotypes in the melon fly
DF Paulo, AY Cha, AN Kauwe, K Curbelo, RL Corpuz, TJ Simmonds, ...
Journal of Economic Entomology 115 (6), 2110-2115, 2022
Mandates: US Department of Energy, US Department of Agriculture
Evaluating Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) Response to Methyl Eugenol: Comparison of Three Common Bioassay Methods
SB Sim, KM Curbelo, NC Manoukis, DH Cha
Journal of Economic Entomology 115 (2), 556-564, 2022
Mandates: US Department of Agriculture
Genetic evidence for the introduction of Rhagoletis pomonella (Diptera: Tephritidae) into the Northwestern United States
SB Sim, MM Doellman, GR Hood, WL Yee, THQ Powell, D Schwarz, ...
Journal of economic entomology 110 (6), 2599-2608, 2017
Mandates: US National Science Foundation, US Department of Agriculture
A Chromosome-Scale Genome Assembly of a Helicoverpa zea Strain Resistant to Bacillus thuringiensis Cry1Ac Insecticidal Protein
AR Stahlke, J Chang, LR Tembrock, SB Sim, S Chudalayandi, SM Geib, ...
Genome Biology and Evolution 15 (3), evac131, 2023
Mandates: US Department of Energy, US Department of Agriculture
Chromosome-scale genome assembly of the rusty patched bumble bee, Bombus affinis (Cresson) (Hymenoptera: Apidae), an endangered North American pollinator
JBU Koch, SB Sim, B Scheffler, SM Geib, TA Smith
G3: Genes, Genomes, Genetics 13 (8), jkad119, 2023
Mandates: US Department of Agriculture
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