Fast gene set enrichment analysis G Korotkevich, V Sukhov, N Budin, B Shpak, MN Artyomov, ... biorxiv, 060012, 2016 | 2865* | 2016 |
Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization AK Jha, SCC Huang, A Sergushichev, V Lampropoulou, Y Ivanova, ... Immunity 42 (3), 419-430, 2015 | 1777 | 2015 |
Itaconate links inhibition of succinate dehydrogenase with macrophage metabolic remodeling and regulation of inflammation V Lampropoulou, A Sergushichev, M Bambouskova, S Nair, EE Vincent, ... Cell metabolism 24 (1), 158-166, 2016 | 1226 | 2016 |
TREM2 maintains microglial metabolic fitness in Alzheimer’s disease TK Ulland, WM Song, SCC Huang, JD Ulrich, A Sergushichev, WL Beatty, ... Cell 170 (4), 649-663. e13, 2017 | 955 | 2017 |
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 808 | 2013 |
Electrophilic properties of itaconate and derivatives regulate the IκBζ–ATF3 inflammatory axis M Bambouskova, L Gorvel, V Lampropoulou, A Sergushichev, ... Nature 556 (7702), 501-504, 2018 | 556 | 2018 |
Mitochondrial phosphoenolpyruvate carboxykinase regulates metabolic adaptation and enables glucose-independent tumor growth EE Vincent, A Sergushichev, T Griss, MC Gingras, B Samborska, ... Molecular cell 60 (2), 195-207, 2015 | 278 | 2015 |
Integrating immunometabolism and macrophage diversity MN Artyomov, A Sergushichev, JD Schilling Seminars in immunology 28 (5), 417-424, 2016 | 177 | 2016 |
Homeostatic control of innate lung inflammation by Vici syndrome gene Epg5 and additional autophagy genes promotes influenza pathogenesis Q Lu, CC Yokoyama, JW Williams, MT Baldridge, X Jin, B DesRochers, ... Cell host & microbe 19 (1), 102-113, 2016 | 100 | 2016 |
Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes NC Howard, ND Marin, M Ahmed, BA Rosa, J Martin, M Bambouskova, ... Nature microbiology 3 (10), 1099-1108, 2018 | 96 | 2018 |
GAM: a web-service for integrated transcriptional and metabolic network analysis AA Sergushichev, AA Loboda, AK Jha, EE Vincent, EM Driggers, ... Nucleic acids research 44 (W1), W194-W200, 2016 | 96 | 2016 |
End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data A Derr, C Yang, R Zilionis, A Sergushichev, DM Blodgett, S Redick, ... Genome research 26 (10), 1397-1410, 2016 | 73 | 2016 |
The miR-17∼ 92 microRNA cluster is a global regulator of tumor metabolism S Izreig, B Samborska, RM Johnson, A Sergushichev, EH Ma, C Lussier, ... Cell reports 16 (7), 1915-1928, 2016 | 72 | 2016 |
De novo mutations in FLNC leading to early‐onset restrictive cardiomyopathy and congenital myopathy A Kiselev, R Vaz, A Knyazeva, A Khudiakov, S Tarnovskaya, J Liu, ... Human mutation 39 (9), 1161-1172, 2018 | 59 | 2018 |
Targeted next-generation sequencing (NGS) of nine candidate genes with custom AmpliSeq in patients and a cardiomyopathy risk group AS Glotov, SV Kazakov, EA Zhukova, AV Alexandrov, OS Glotov, ... Clinica Chimica Acta 446, 132-140, 2015 | 49 | 2015 |
Non-canonical glutamine transamination sustains efferocytosis by coupling redox buffering to oxidative phosphorylation J Merlin, S Ivanov, A Dumont, A Sergushichev, J Gall, M Stunault, ... Nature metabolism 3 (10), 1313-1326, 2021 | 48 | 2021 |
LKB1 expressed in dendritic cells governs the development and expansion of thymus-derived regulatory T cells LR Pelgrom, TA Patente, A Sergushichev, E Esaulova, F Otto, ... Cell research 29 (5), 406-419, 2019 | 45 | 2019 |
ImmGen at 15 SV Aguilar, O Aguilar, R Allan, EAD Amir, V Angeli, MN Artyomov, ... Nature immunology 21 (7), 700-703, 2020 | 30 | 2020 |
Solving generalized maximum-weight connected subgraph problem for network enrichment analysis AA Loboda, MN Artyomov, AA Sergushichev Algorithms in Bioinformatics: 16th International Workshop, WABI 2016, Aarhus …, 2016 | 30 | 2016 |
Tonic TCR signaling inversely regulates the basal metabolism of CD4+ T cells AAV Milam, JM Bartleson, MD Buck, CH Chang, A Sergushichev, ... ImmunoHorizons 4 (8), 485-497, 2020 | 21 | 2020 |