Articles with public access mandates - Matthew Bryan ScholzLearn more
Not available anywhere: 1
Genomics for key players in the N cycle: from guinea pigs to the next frontier
PSG Chain, G Xie, SR Starkenburg, MB Scholz, N Beckloff, CC Lo, ...
Methods in Enzymology 496, 289-318, 2011
Mandates: US National Institutes of Health
Available somewhere: 36
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Research …
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Research …
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
JA Dodsworth, PC Blainey, SK Murugapiran, WD Swingley, CA Ross, ...
Nature communications 4 (1), 1854, 2013
Mandates: US National Institutes of Health
High dietary salt–induced DC activation underlies microbial dysbiosis-associated hypertension
JF Ferguson, LA Aden, NR Barbaro, JP Van Beusecum, L Xiao, ...
JCI insight 4 (13), 2019
Mandates: US National Institutes of Health, American Heart Association
Multi-omic analysis of the microbiome and metabolome in healthy subjects reveals microbiome-dependent relationships between diet and metabolites
ZZ Tang, G Chen, Q Hong, S Huang, HM Smith, RD Shah, M Scholz, ...
Frontiers in Genetics 10, 454, 2019
Mandates: US National Institutes of Health, American Heart Association
Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk
RM O’Connor, JM Fung, KH Sharp, JS Benner, C McClung, S Cushing, ...
Proceedings of the National Academy of Sciences 111 (47), E5096-E5104, 2014
Mandates: US Department of Energy, US National Institutes of Health
SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis
BK Johnson, MB Scholz, TK Teal, RB Abramovitch
BMC bioinformatics 17, 1-4, 2016
Mandates: Bill & Melinda Gates Foundation, US National Institutes of Health
Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs
M Scholz, CC Lo, PSG Chain
Scientific Reports 4 (1), 6480, 2014
Mandates: US Department of Energy
Whole-Genome Assemblies of 56 Burkholderia Species
HE Daligault, KW Davenport, TD Minogue, KA Bishop-Lilly, SM Broomall, ...
Genome announcements 2 (6), 10.1128/genomea. 01106-14, 2014
Mandates: US Department of Energy
High-salt conditions alter transcription of Helicobacter pylori genes encoding outer membrane proteins
JT Loh, AC Beckett, MB Scholz, TL Cover
Infection and Immunity 86 (3), 10.1128/iai. 00626-17, 2018
Mandates: US National Institutes of Health, US Department of Veterans Affairs
Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis
MJ Heinrich, CA Purcell, AJ Pruijssers, Y Zhao, CF Spurlock III, S Sriram, ...
Journal of autoimmunity 100, 40-51, 2019
Mandates: US National Institutes of Health
Modification of the gastric mucosal microbiota by a strain-specific Helicobacter pylori oncoprotein and carcinogenic histologic phenotype
JM Noto, JP Zackular, MG Varga, A Delgado, J Romero-Gallo, MB Scholz, ...
MBio 10 (3), 10.1128/mbio. 00955-19, 2019
Mandates: US National Institutes of Health
Delineation of the pH-responsive regulon controlled by the Helicobacter pylori ArsRS two-component system
JT Loh, MV Shum, SDR Jossart, AM Campbell, N Sawhney, ...
Infection and Immunity 89 (4), 10.1128/iai. 00597-20, 2021
Mandates: US National Institutes of Health, US Department of Veterans Affairs
Effect of environmental salt concentration on the Helicobacter pylori exoproteome
RR Caston, JT Loh, BJ Voss, WH McDonald, MB Scholz, MS McClain, ...
Journal of proteomics 202, 103374, 2019
Mandates: US National Institutes of Health, US Department of Veterans Affairs
Complete genome sequence of Stenotrophomonas maltophilia type strain 810-2 (ATCC 13637)
KW Davenport, HE Daligault, TD Minogue, SM Broomall, DC Bruce, ...
Genome announcements 2 (5), 10.1128/genomea. 00974-14, 2014
Mandates: US Department of Energy
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp …
HL Woo, KM DeAngelis, H Teshima, K Davenport, H Daligault, T Erkkila, ...
Genome announcements 5 (18), 10.1128/genomea. 00300-17, 2017
Mandates: US National Science Foundation, US Department of Energy
Twenty Whole-Genome Bacillus sp. Assemblies
HE Daligault, KW Davenport, TD Minogue, KA Bishop-Lilly, SM Broomall, ...
Genome announcements 2 (5), 10.1128/genomea. 00958-14, 2014
Mandates: US Department of Energy
Whole-Genome Sequences of 24 Brucella Strains
TD Minogue, HA Daligault, KW Davenport, KA Bishop-Lilly, SM Broomall, ...
Genome announcements 2 (5), 10.1128/genomea. 00915-14, 2014
Mandates: US Department of Energy
Genome assembly of Serratia marcescens type strain ATCC 13880
HE Daligault, KW Davenport, TD Minogue, SM Broomall, DC Bruce, ...
Genome announcements 2 (5), 10.1128/genomea. 00967-14, 2014
Mandates: US Department of Energy
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