Articles with public access mandates - Luis MendozaLearn more
Not available anywhere: 1
Trans-proteomic pipeline for the identification, validation, and quantification of proteins
EW Deutsch, L Mendoza, DD Shteynberg, Z Sun, MH Hoopmann, ...
Mandates: US National Institutes of Health
Available somewhere: 34
A guided tour of the Trans‐Proteomic Pipeline
EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ...
Proteomics 10 (6), 1150-1159, 2010
Mandates: US National Institutes of Health
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ...
Molecular & cellular proteomics 10 (12), 2011
Mandates: US National Institutes of Health
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz
PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015
Mandates: US National Institutes of Health, UK Medical Research Council
The ProteomeXchange consortium at 10 years: 2023 update
EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ...
Nucleic acids research 51 (D1), D1539-D1548, 2023
Mandates: US National Science Foundation, US National Institutes of Health, National …
PASSEL: The P eptide A tlas SRM experiment library
T Farrah, EW Deutsch, R Kreisberg, Z Sun, DS Campbell, L Mendoza, ...
Proteomics 12 (8), 1170-1175, 2012
Mandates: Swiss National Science Foundation, US National Institutes of Health
PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline
DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ...
Journal of proteome research 18 (12), 4262-4272, 2019
Mandates: US National Institutes of Health, Cancer Research UK, UK Medical Research …
MaRiMba: a software application for spectral library-based MRM transition list assembly
CA Sherwood, A Eastham, LW Lee, A Peterson, JK Eng, D Shteynberg, ...
Journal of proteome research 8 (10), 4396-4405, 2009
Mandates: US National Institutes of Health
TraML—a standard format for exchange of selected reaction monitoring transition lists
EW Deutsch, M Chambers, S Neumann, F Levander, PA Binz, J Shofstahl, ...
Molecular & Cellular Proteomics 11 (4), 2012
Mandates: US National Institutes of Health
State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet
EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ...
Journal of proteome research 14 (9), 3461-3473, 2015
Mandates: US National Institutes of Health
Expanding the use of spectral libraries in proteomics
EW Deutsch, Y Perez-Riverol, RJ Chalkley, M Wilhelm, S Tate, ...
Journal of proteome research 17 (12), 4051-4060, 2018
Mandates: US National Institutes of Health, UK Biotechnology and Biological Sciences …
Successful recovery of COVID-19 pneumonia in a patient from Colombia after receiving chloroquine and clarithromycin
J Millan-Onate, W Millan, LA Mendoza, CG Sánchez, ...
Annals of Clinical Microbiology and Antimicrobials 19, 1-9, 2020
Mandates: US National Institutes of Health
Universal Spectrum Identifier for mass spectra
EW Deutsch, Y Perez-Riverol, J Carver, S Kawano, L Mendoza, ...
Nature methods 18 (7), 768-770, 2021
Mandates: US National Science Foundation, US National Institutes of Health, Research …
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ...
Clinical and translational science 15 (8), 1848-1855, 2022
Mandates: US Department of Energy, US National Institutes of Health
The Arabidopsis PeptideAtlas: harnessing worldwide proteomics data to create a comprehensive community proteomics resource
KJ Van Wijk, T Leppert, Q Sun, SS Boguraev, Z Sun, L Mendoza, ...
The Plant Cell 33 (11), 3421-3453, 2021
Mandates: US National Science Foundation
Trans-proteomic pipeline: robust mass spectrometry-based proteomics data analysis suite
EW Deutsch, L Mendoza, DD Shteynberg, MR Hoopmann, Z Sun, JK Eng, ...
Journal of proteome research 22 (2), 615-624, 2023
Mandates: US National Science Foundation, US National Institutes of Health
Trans‐Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets
EW Deutsch, D Shteynberg, H Lam, Z Sun, JK Eng, C Carapito, ...
Proteomics 10 (6), 1190-1195, 2010
Mandates: US National Institutes of Health
The microvesicle component of HIV-1 inocula modulates dendritic cell infection and maturation and enhances adhesion to and activation of T lymphocytes
SK Mercier, H Donaghy, RA Botting, SG Turville, AN Harman, N Nasr, H Ji, ...
PLoS pathogens 9 (10), e1003700, 2013
Mandates: US National Institutes of Health, National Health and Medical Research …
Proteomics standards initiative extended FASTA format
PA Binz, J Shofstahl, JA Vizcaíno, H Barsnes, RJ Chalkley, G Menschaert, ...
Journal of proteome research 18 (6), 2686-2692, 2019
Mandates: US National Institutes of Health, European Molecular Biology Laboratory …
reSpect: software for identification of high and low abundance ion species in chimeric tandem mass spectra
D Shteynberg, L Mendoza, MR Hoopmann, Z Sun, F Schmidt, ...
Journal of the American Society for Mass Spectrometry 26 (11), 1837-1847, 2015
Mandates: US National Institutes of Health
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