Articles with public access mandates - Daniel SegrèLearn more
Not available anywhere: 3
Learning cellular objectives from fluxes by inverse optimization
Q Zhao, A Stettner, E Reznik, D Segrè, IC Paschalidis
2015 54th IEEE Conference on Decision and Control (CDC), 1271-1276, 2015
Mandates: US Department of Energy, US National Institutes of Health
Optimal allocation of metabolic functions among organisms in a microbial ecosystem
Q Zhao, D Segrè, IC Paschalidisy
2016 IEEE 55th Conference on Decision and Control (CDC), 7063-7068, 2016
Mandates: US National Science Foundation, US Department of Energy, US National …
Quantitative principles of microbial metabolism shared across scales
D Sher, D Segrè, MJ Follows
Nature Microbiology, 1-14, 2024
Mandates: Human Frontier Science Program
Available somewhere: 86
Emergent simplicity in microbial community assembly
JE Goldford, N Lu, D Bajić, S Estrela, M Tikhonov, A Sanchez-Gorostiaga, ...
Science 361 (6401), 469-474, 2018
Mandates: US National Science Foundation, US Department of Energy, US Department of …
Diminishing returns epistasis among beneficial mutations decelerates adaptation
HH Chou, HC Chiu, NF Delaney, D Segrè, CJ Marx
Science 332 (6034), 1190-1192, 2011
Mandates: US National Institutes of Health
Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics
WR Harcombe, WJ Riehl, I Dukovski, BR Granger, A Betts, AH Lang, ...
Cell reports 7 (4), 1104-1115, 2014
Mandates: US National Institutes of Health
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ...
PloS one 7 (6), e37919, 2012
Mandates: US National Institutes of Health
A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells
BM Maoz, A Herland, EA FitzGerald, T Grevesse, C Vidoudez, ...
Nature biotechnology 36 (9), 865-874, 2018
Mandates: US National Science Foundation, US Department of Defense, US National …
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
AR Pacheco, M Moel, D Segrè
Nature communications 10 (1), 103, 2019
Mandates: US National Science Foundation, US Department of Energy, Ford Foundation, US …
Synthetic ecology of microbes: mathematical models and applications
AR Zomorrodi, D Segrè
Journal of molecular biology 428 (5), 837-861, 2016
Mandates: US National Science Foundation, US Department of Energy, US National …
Remnants of an ancient metabolism without phosphate
JE Goldford, H Hartman, TF Smith, D Segrè
Cell 168 (6), 1126-1134. e9, 2017
Mandates: US National Science Foundation, US Department of Energy, US National …
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities
AR Zomorrodi, D Segrè
Nature communications 8 (1), 1563, 2017
Mandates: US Department of Energy, US Department of Defense, US National Institutes of …
Microbial carbon use efficiency predicted from genome-scale metabolic models
M Saifuddin, JM Bhatnagar, D Segrè, AC Finzi
Nature communications 10 (1), 3568, 2019
Mandates: US National Science Foundation, US Department of Energy
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
DB Bernstein, S Sulheim, E Almaas, D Segrè
Genome Biology 22, 1-22, 2021
Mandates: US National Science Foundation, US Department of Energy, US National …
Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY
SR Brinsmade, EL Alexander, J Livny, AI Stettner, D Segrè, KY Rhee, ...
Proceedings of the National Academy of Sciences 111 (22), 8227-8232, 2014
Mandates: US National Institutes of Health
Microbial metabolites in the marine carbon cycle
MA Moran, EB Kujawinski, WF Schroer, SA Amin, NR Bates, EM Bertrand, ...
Nature microbiology 7 (4), 508-523, 2022
Mandates: US National Science Foundation, Gordon and Betty Moore Foundation, Natural …
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ...
Nature protocols 16 (11), 5030-5082, 2021
Mandates: US National Science Foundation, US Department of Energy, Ford Foundation, US …
Designing metabolic division of labor in microbial communities
M Thommes, T Wang, Q Zhao, IC Paschalidis, D Segrè
MSystems 4 (2), 10.1128/msystems. 00263-18, 2019
Mandates: US National Science Foundation, US Department of Energy, US Department of …
Metabolic network model of a human oral pathogen
V Mazumdar, ES Snitkin, S Amar, D Segre
Journal of bacteriology 191 (1), 74-90, 2009
Mandates: US National Institutes of Health
Genome-scale architecture of small molecule regulatory networks and the fundamental trade-off between regulation and enzymatic activity
E Reznik, D Christodoulou, JE Goldford, E Briars, U Sauer, D Segrè, ...
Cell reports 20 (11), 2666-2677, 2017
Mandates: US Department of Energy, US National Institutes of Health, Human Frontier …
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