Articles with public access mandates - Brendan MumeyLearn more
Not available anywhere: 1
Graph-Based Machine Learning Approaches for Pangenomics
I Kahanda, J Mudge, B Manuweera, T Ramaraj, A Cleary, B Mumey
Machine Learning Methods for Multi-Omics Data Integration, 117-132, 2023
Mandates: US National Science Foundation
Available somewhere: 21
Antigen–antibody interface properties: Composition, residue interactions, and features of 53 non-redundant structures
T Ramaraj, T Angel, EA Dratz, AJ Jesaitis, B Mumey
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1824 (3), 520-532, 2012
Mandates: US National Institutes of Health
Sparsifying, shrinking and splicing for minimum path cover in parameterized linear time
M Cáceres, M Cairo, B Mumey, R Rizzi, AI Tomescu
Proceedings of the 2022 Annual ACM-SIAM Symposium on Discrete Algorithms …, 2022
Mandates: US National Science Foundation, Academy of Finland, European Commission
Combining targeted metabolomic data with a model of glucose metabolism: toward progress in chondrocyte mechanotransduction
D Salinas, CA Minor, RP Carlson, CN McCutchen, BM Mumey, RK June
PloS one 12 (1), e0168326, 2017
Mandates: US National Science Foundation, US National Institutes of Health
Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping
H Li, X Hu, JT Lovell, PP Grabowski, S Mamidi, C Chen, M Amirebrahimi, ...
The plant genome 14 (2), e20110, 2021
Mandates: US Department of Energy, US Department of Agriculture
Physiological dynamic compression regulates central energy metabolism in primary human chondrocytes
D Salinas, BM Mumey, RK June
Biomechanics and modeling in mechanobiology 18, 69-77, 2019
Mandates: US National Science Foundation, US National Institutes of Health
Flow decomposition with subpath constraints
L Williams, AI Tomescu, B Mumey
IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022
Mandates: US National Science Foundation, Academy of Finland, European Commission
Pangenome-wide association studies with frequented regions
B Manuweera, J Mudge, I Kahanda, B Mumey, T Ramaraj, A Cleary
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
Mandates: US National Science Foundation
Safety in multi-assembly via paths appearing in all path covers of a DAG
M Cáceres, B Mumey, E Husić, R Rizzi, M Cairo, K Sahlin, AI Tomescu
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (6 …, 2021
Mandates: US National Science Foundation, Academy of Finland, European Commission
A linear-time parameterized algorithm for computing the width of a DAG
M Cáceres, M Cairo, B Mumey, R Rizzi, AI Tomescu
Graph-Theoretic Concepts in Computer Science: 47th International Workshop …, 2021
Mandates: Academy of Finland, European Commission
Exploring frequented regions in pan-genomic graphs
A Cleary, I Kahanda, B Mumey, J Mudge, T Ramaraj
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
Mandates: US National Science Foundation
Fast, flexible, and exact minimum flow decompositions via ILP
FHC Dias, L Williams, B Mumey, AI Tomescu
International Conference on Research in Computational Molecular Biology, 230-245, 2022
Mandates: US National Science Foundation, Academy of Finland, European Commission
Scheduling non-preemptible jobs to minimize peak demand
S Yaw, B Mumey
Algorithms 10 (4), 122, 2017
Mandates: US National Science Foundation, US Department of Energy
Width helps and hinders splitting flows
M Cáceres, M Cairo, A Grigorjew, S Khan, B Mumey, R Rizzi, AI Tomescu, ...
ACM Transactions on Algorithms 20 (2), 1-20, 2024
Mandates: Academy of Finland, European Commission
Maximal perfect haplotype blocks with wildcards
L Williams, B Mumey
Iscience 23 (6), 2020
Mandates: US National Science Foundation
Search for a shared genetic or biochemical basis for biofilm tolerance to antibiotics across bacterial species
PS Stewart, KS Williamson, L Boegli, T Hamerly, B White, L Scott, X Hu, ...
Antimicrobial Agents and Chemotherapy 66 (4), e00021-22, 2022
Mandates: US Department of Defense, US National Institutes of Health
A safety framework for flow decomposition problems via integer linear programming
FHC Dias, M Cáceres, L Williams, B Mumey, AI Tomescu
Bioinformatics 39 (11), btad640, 2023
Mandates: Academy of Finland, European Commission
Efficient minimum flow decomposition via integer linear programming
FHC Dias, L Williams, B Mumey, AI Tomescu
Journal of Computational Biology 29 (11), 1252-1267, 2022
Mandates: US National Science Foundation, Academy of Finland, European Commission
Approximate frequent subpath mining applied to pangenomics
A Cleary, B Mumey, T Ramaraj, J Mudge
Proc. Int. Conf. Bioinf. Comput. Biol, 59-65, 2017
Mandates: US National Science Foundation
Extending maximal perfect haplotype blocks to the realm of pangenomics
L Williams, B Mumey
Algorithms for Computational Biology: 7th International Conference, AlCoB …, 2020
Mandates: US National Science Foundation
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