Cholesterol level affects surface charge of lipid membranes in saline solution A Magarkar, V Dhawan, P Kallinteri, T Viitala, M Elmowafy, T Róg, ... Scientific reports 4 (1), 5005, 2014 | 223 | 2014 |
Rational design of liposomal drug delivery systems, a review: Combined experimental and computational studies of lipid membranes, liposomes and their PEGylation A Bunker, A Magarkar, T Viitala Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2334-2352, 2016 | 208 | 2016 |
Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore C Allolio, A Magarkar, P Jurkiewicz, K Baxová, M Javanainen, PE Mason, ... Proceedings of the National Academy of Sciences 115 (47), 11923-11928, 2018 | 204 | 2018 |
Influence of doxorubicin on model cell membrane properties: insights from in vitro and in silico studies AC Alves, A Magarkar, M Horta, JLFC Lima, A Bunker, C Nunes, S Reis Scientific reports 7 (1), 6343, 2017 | 105 | 2017 |
Oncolytic adenoviruses coated with MHC-I tumor epitopes increase the antitumor immunity and efficacy against melanoma C Capasso, M Hirvinen, M Garofalo, D Romaniuk, L Kuryk, T Sarvela, ... Oncoimmunology 5 (4), e1105429, 2016 | 100 | 2016 |
Analysis of cause of failure of new targeting peptide in PEGylated liposome: molecular modeling as rational design tool for nanomedicine J Lehtinen, A Magarkar, M Stepniewski, S Hakola, M Bergman, T Róg, ... European journal of pharmaceutical sciences 46 (3), 121-130, 2012 | 80 | 2012 |
Molecular dynamics simulation of PEGylated bilayer interacting with salt ions: a model of the liposome surface in the bloodstream A Magarkar, E Karakas, M Stepniewski, T Rog, A Bunker The Journal of Physical Chemistry B 116 (14), 4212-4219, 2012 | 77 | 2012 |
Two cations, two mechanisms: interactions of sodium and calcium with zwitterionic lipid membranes M Javanainen, A Melcrová, A Magarkar, P Jurkiewicz, M Hof, P Jungwirth, ... Chemical Communications 53 (39), 5380-5383, 2017 | 60 | 2017 |
In vitro and in vivo behavior of liposomes decorated with PEGs with different chemical features F Mastrotto, C Brazzale, F Bellato, S De Martin, G Grange, ... Molecular pharmaceutics 17 (2), 472-487, 2019 | 49 | 2019 |
Hydrophobin film structure for HFBI and HFBII and mechanism for accelerated film formation A Magarkar, N Mele, N Abdel-Rahman, S Butcher, M Torkkeli, R Serimaa, ... PLoS computational biology 10 (7), e1003745, 2014 | 36 | 2014 |
Design of cholesterol arabinogalactan anchored liposomes for asialoglycoprotein receptor mediated targeting to hepatocellular carcinoma: In silico modeling, in vitro and in … P Pathak, V Dhawan, A Magarkar, R Danne, S Govindarajan, S Ghosh, ... International Journal of Pharmaceutics 509 (1-2), 149-158, 2016 | 35 | 2016 |
Molecular dynamics simulation of PEGylated membranes with cholesterol: building toward the DOXIL formulation A Magarkar, T Rog, A Bunker The Journal of Physical Chemistry C 118 (28), 15541-15549, 2014 | 34 | 2014 |
Increased binding of calcium ions at positively curved phospholipid membranes A Magarkar, P Jurkiewicz, C Allolio, M Hof, P Jungwirth The Journal of Physical Chemistry Letters 8 (2), 518-523, 2017 | 32 | 2017 |
A novel in silico framework to improve MHC-I epitopes and break the tolerance to melanoma C Capasso, A Magarkar, V Cervera-Carrascon, M Fusciello, S Feola, ... Oncoimmunology 6 (9), e1319028, 2017 | 29 | 2017 |
Evaluating the use of absolute binding free energy in the fragment optimisation process I Alibay, A Magarkar, D Seeliger, PC Biggin Communications Chemistry 5 (1), 105, 2022 | 25 | 2022 |
Membrane bound COMT isoform is an interfacial enzyme: general mechanism and new drug design paradigm A Magarkar, P Parkkila, T Viitala, T Lajunen, E Mobarak, G Licari, ... Chemical Communications 54 (28), 3440-3443, 2018 | 24 | 2018 |
A computational study suggests that replacing PEG with PMOZ may increase exposure of hydrophobic targeting moiety A Magarkar, T Rog, A Bunker European Journal of Pharmaceutical Sciences 103, 128-135, 2017 | 22 | 2017 |
Molecular dynamics simulation of inverse-phosphocholine lipids A Magarkar, T Rog, A Bunker The Journal of Physical Chemistry C 118 (33), 19444-19449, 2014 | 22 | 2014 |
Properties of the Membrane Binding Component of Catechol-O-methyltransferase Revealed by Atomistic Molecular Dynamics Simulations A Orłowski, JF St-Pierre, A Magarkar, A Bunker, M Pasenkiewicz-Gierula, ... The Journal of Physical Chemistry B 115 (46), 13541-13550, 2011 | 21 | 2011 |
Fragment binding pose predictions using unbiased simulations and Markov-state models SM Linker, A Magarkar, J Köfinger, G Hummer, D Seeliger Journal of Chemical Theory and Computation 15 (9), 4974-4981, 2019 | 20 | 2019 |