Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011 | 17496 | 2011 |
Comprehensive mapping of long-range interactions reveals folding principles of the human genome E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ... science 326 (5950), 289-293, 2009 | 8795 | 2009 |
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ... Nature 458 (7235), 223-227, 2009 | 4842 | 2009 |
A unique microglia type associated with restricting development of Alzheimer’s disease H Keren-Shaul, A Spinrad, A Weiner, O Matcovitch-Natan, ... Cell 169 (7), 1276-1290. e17, 2017 | 3988 | 2017 |
Host microbiota constantly control maturation and function of microglia in the CNS D Erny, AL Hrabě de Angelis, D Jaitin, P Wieghofer, O Staszewski, ... Nature neuroscience 18 (7), 965-977, 2015 | 3036 | 2015 |
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response M Huarte, M Guttman, D Feldser, M Garber, MJ Koziol, ... Cell 142 (3), 409-419, 2010 | 2426 | 2010 |
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 M Liao, Y Liu, J Yuan, Y Wen, G Xu, J Zhao, L Cheng, J Li, X Wang, ... Nature medicine 26 (6), 842-844, 2020 | 2382 | 2020 |
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment Y Lavin, D Winter, R Blecher-Gonen, E David, H Keren-Shaul, M Merad, ... Cell 159 (6), 1312-1326, 2014 | 2204 | 2014 |
lincRNAs act in the circuitry controlling pluripotency and differentiation M Guttman, J Donaghey, BW Carey, M Garber, JK Grenier, G Munson, ... Nature 477 (7364), 295-300, 2011 | 2183 | 2011 |
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644, 2011 | 2181 | 2011 |
The human cell atlas A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ... elife 6, e27041, 2017 | 2108 | 2017 |
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types DA Jaitin, E Kenigsberg, H Keren-Shaul, N Elefant, F Paul, I Zaretsky, ... Science 343 (6172), 776-779, 2014 | 1947 | 2014 |
m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation S Geula, S Moshitch-Moshkovitz, D Dominissini, AAF Mansour, N Kol, ... Science 347 (6225), 1002-1006, 2015 | 1536 | 2015 |
Derivation of novel human ground state naive pluripotent stem cells O Gafni, L Weinberger, AAF Mansour, YS Manor, E Chomsky, ... Nature 504 (7479), 282-286, 2013 | 1213 | 2013 |
Transcriptional heterogeneity and lineage commitment in myeloid progenitors F Paul, Y Arkin, A Giladi, DA Jaitin, E Kenigsberg, H Keren-Shaul, ... Cell 163 (7), 1663-1677, 2015 | 1159 | 2015 |
Microglia development follows a stepwise program to regulate brain homeostasis O Matcovitch-Natan, DR Winter, A Giladi, S Vargas Aguilar, A Spinrad, ... Science 353 (6301), aad8670, 2016 | 1143 | 2016 |
Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses Y Lavin, S Kobayashi, A Leader, ED Amir, N Elefant, C Bigenwald, ... Cell 169 (4), 750-765. e17, 2017 | 1084 | 2017 |
Disease-associated microglia: a universal immune sensor of neurodegeneration A Deczkowska, H Keren-Shaul, A Weiner, M Colonna, M Schwartz, I Amit Cell 173 (5), 1073-1081, 2018 | 975 | 2018 |
Single-cell spatial reconstruction reveals global division of labour in the mammalian liver KB Halpern, R Shenhav, O Matcovitch-Natan, B Toth, D Lemze, M Golan, ... Nature 542 (7641), 352-356, 2017 | 921 | 2017 |
Microbiota-modulated metabolites shape the intestinal microenvironment by regulating NLRP6 inflammasome signaling M Levy, CA Thaiss, D Zeevi, L Dohnalová, G Zilberman-Schapira, ... Cell 163 (6), 1428-1443, 2015 | 907 | 2015 |