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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Mandates: US National Institutes of Health
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
Mandates: US National Science Foundation, US Department of Energy, Swiss National …
PANNZER2: a rapid functional annotation web server
P Törönen, A Medlar, L Holm
Nucleic acids research 46 (W1), W84-W88, 2018
Mandates: Academy of Finland
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Mandates: US National Science Foundation, Swiss National Science Foundation, US …
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination
AJ Medlar, P Törönen, L Holm
Nucleic acids research 46 (W1), W479-W485, 2018
Mandates: Academy of Finland
The giant diploid faba genome unlocks variation in a global protein crop
M Jayakodi, AA Golicz, J Kreplak, LI Fechete, D Angra, P Bednář, ...
Nature 615 (7953), 652-659, 2023
Mandates: German Research Foundation, Leibniz Association, UK Biotechnology and …
Molecular fingerprint and developmental regulation of the tegmental GABAergic and glutamatergic neurons derived from the anterior hindbrain
F Morello, D Borshagovski, M Survila, L Tikker, S Sadik-Ogli, ...
Cell reports 33 (2), 2020
Mandates: Academy of Finland, UK Biotechnology and Biological Sciences Research Council
Epigenome-450K-wide methylation signatures of active cigarette smoking: The Young Finns Study
PP Mishra, I Hänninen, E Raitoharju, S Marttila, BH Mishra, N Mononen, ...
Bioscience Reports 40 (7), BSR20200596, 2020
Mandates: Academy of Finland, European Commission
Global analysis of aging-related protein structural changes uncovers enzyme-polymerization-based control of longevity
J Paukštytė, RML Cabezas, Y Feng, K Tong, D Schnyder, E Elomaa, ...
Molecular Cell 83 (18), 3360-3376. e11, 2023
Mandates: Academy of Finland, Human Frontier Science Program
Mitotic abnormalities precede microsatellite instability in lynch syndrome-associated colorectal tumourigenesis
M Pussila, A Laiho, P Törönen, P Björkbacka, S Nykänen, K Pylvänäinen, ...
EBioMedicine 103, 2024
Mandates: Academy of Finland
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