| Enhancer hubs and loop collisions identified from single-allele topologies A Allahyar, C Vermeulen, BAM Bouwman, PHL Krijger, MJAM Verstegen, ... Nature genetics 50 (8), 1151-1160, 2018 | 219 | 2018 |
| FERAL: network-based classifier with application to breast cancer outcome prediction A Allahyar, J De Ridder Bioinformatics 31 (12), i311-i319, 2015 | 48 | 2015 |
| Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression ESM Vos, C Valdes-Quezada, Y Huang, A Allahyar, MJAM Verstegen, ... Molecular cell 81 (15), 3082-3095. e6, 2021 | 36 | 2021 |
| Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing A Allahyar, M Pieterse, J Swennenhuis, GT Los-de Vries, M Yilmaz, ... Nature communications 12 (1), 3361, 2021 | 26 | 2021 |
| Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies C Vermeulen, A Allahyar, BAM Bouwman, PHL Krijger, MJAM Verstegen, ... Nature Protocols 15 (2), 364-397, 2020 | 26 | 2020 |
| A data-driven interactome of synergistic genes improves network-based cancer outcome prediction A Allahyar, J Ubels, J de Ridder PLOS Computational Biology 15 (2), e1006657, 2019 | 17 | 2019 |
| Gamma-retrovirus integration marks cell type-specific cancer genes: a novel profiling tool in cancer genomics KL Gilroy, A Terry, A Naseer, J de Ridder, A Allahyar, W Wang, ... PloS one 11 (4), e0154070, 2016 | 15 | 2016 |
| Constrained semi-supervised growing self-organizing map A Allahyar, HS Yazdi, A Harati Neurocomputing 147, 456-471, 2015 | 13 | 2015 |
| Targeted cohesin loading characterizes the entry and exit sites of loop extrusion trajectories R Han, Y Huang, I Vaandrager, A Allahyar, M Magnitov, MJAM Verstegen, ... bioRxiv, 2023.01. 04.522689, 2023 | 4 | 2023 |
| Online discriminative component analysis feature extraction from stream data with domain knowledge A Allahyar, HS Yazdi Intelligent Data Analysis 18 (5), 927-951, 2014 | 4 | 2014 |
| Locus-specific enhancer hubs and architectural loop collisions uncovered from single allele DNA topologies A Allahyar, C Vermeulen, BAM Bouwman, PHL Krijger, MJAM Verstegen, ... bioRxiv, 206094, 2017 | 3 | 2017 |
| Formalin-Fixed, Paraffin-Embedded–Targeted Locus Capture: A Next-Generation Sequencing Technology for Accurate DNA-Based Gene Fusion Detection in Bone and Soft Tissue Tumors E Stelloo, RWJ Meijers, JF Swennenhuis, A Allahyar, K Hajo, M Cangiano, ... The Journal of Molecular Diagnostics 25 (10), 758-770, 2023 | 1 | 2023 |
| A lentiviral vector‐based insertional mutagenesis screen identifies mechanisms of resistance to MAPK inhibitors in melanoma. M Ranzani, C Alifrangis, NA Thompson, AG Rust, A Allahyar, V Iyer, ... Pigment Cell & Melanoma Research 32 (2), 2019 | 1 | 2019 |
| FFPE-TLC: an NGS technology for accurate DNA-based gene fusion detection in bone and soft tissue tumors. E Stelloo, RWJ Meijers, JF Swennenhuis, A Allahyar, K Hajo, M Cangiano, ... The Journal of Molecular Diagnostics: JMD, S1525-1578 (23) 00155, 2023 | | 2023 |
| Looking for Looping Factors NJ Rinzema, SJD Tjalsma, MJAM Verstegen, A Allahyar How Enhancers Shape and Activate the Genome, 75, 2022 | | 2022 |
| Structural variation detection in chromosomal proximity experiments W De Laat, A Allahyar, E Splinter WO Patent WO2021215927A1, 2021 | | 2021 |
| Abstract PO-45: Robust detection of translocations in lymphoma FFPE samples using Targeted Locus Capture-based sequencing A Allahyar, M Pieterse, J Swennenhuis, T Los-de Vries, M Yilmaz, ... Blood Cancer Discovery 1 (3_Supplement), PO-45-PO-45, 2020 | | 2020 |
| Regulation of disease-associated gene expression in the 3D genome W De Laat, P Krijger, M Verstegen, G Geeven, V Bianchi, C Vermeulen, ... EUROPEAN JOURNAL OF HUMAN GENETICS 27, 1063-1064, 2019 | | 2019 |
| Multi-Contact 4C (MC-4C): long molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies C Vermeulen, A Allahyar, BAM Bouwman, PHL Krijger, MJAM Verstegen, ... | | 2019 |
| Molecular interactomes: Network-guided cancer prognosis prediction & multi-way chromatin interaction analysis A Allahyar | | 2018 |
Wouter de LaatVerified email at hubrecht.eu